Browse Element(s) Details


OsAffx.5514.1.S1_x_at

Description tigr:9630.m04562
TID=OsAffx.5514.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4692011/11Transposable element protein, putative, Transposase_24, expressed
LOC_Os07g333004/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46880OsAffx.22848.3.S1_x_at3/112+28589936..28595836retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g46880OsAffx.22848.4.S1_at2/112+28589936..28595836retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g46880OsAffx.22848.4.S1_x_at2/112+28589936..28595836retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g46890NANA2+28599792..28602017transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g46900NANA2+28603749..28606697transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g46910Os.25564.1.S1_at11/112+28616522..28618777xyloglucan endotransglucosylase/hydrolase protein 28precursor, putative, expressed
LOC_Os02g46910Os.22824.1.A1_at11/112+28616522..28618777xyloglucan endotransglucosylase/hydrolase protein 28precursor, putative, expressed
LOC_Os02g46920OsAffx.5514.1.S1_at11/112+28620270..28626527Transposable element protein, putative, Transposase_24, expressed
LOC_Os02g46920OsAffx.5514.1.S1_x_at11/112+28620270..28626527Transposable element protein, putative, Transposase_24, expressed
LOC_Os02g46920Os.54539.1.S1_at1/112+28620270..28626527Transposable element protein, putative, Transposase_24, expressed
LOC_Os02g46930Os.5373.1.S1_at11/112+28636904..28639748jmjC domain containing protein, expressed
LOC_Os02g46930OsAffx.2983.1.S1_x_at10/112+28636904..28639748jmjC domain containing protein, expressed
LOC_Os02g46940OsAffx.12531.1.S1_at11/112+28646886..28649646myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5514.1.S1_x_at--930--2331Chr02:28621090..28621114 (25 bp)
AAAGACAGTTTCATACACCACTCCA
LOC_Os02g46920
OsAffx.5514.1.S1_x_at--817--331Chr02:28621078..28621102 (25 bp)
ATACACCACTCCATGAAGGGCTGGA
LOC_Os02g46920
OsAffx.5514.1.S1_x_at--327--8351Chr02:28620986..28621084 (25 bp)
GGCTGGAGGCTGGATTAGATACAAA
LOC_Os02g46920
OsAffx.5514.1.S1_x_at--101--5571Chr02:28620940..28620964 (25 bp)
GAAAGTTGGCCTAATATCTCCAAAA
LOC_Os02g46920
OsAffx.5514.1.S1_x_at--571--7912Chr08:6085117..6085141 (25 bp)
GGTTGCTCTAGGTACCATTCAGAAG
NONE
OsAffx.5514.1.S1_x_at--63--3412Chr08:6085098..6085122 (25 bp)
CAGAAGACCGACAAAAACGCTATTT
NONE
OsAffx.5514.1.S1_x_at--617--193Chr08:6084687..6085101 (25 bp)
ATTTCTGTTGATGGCCAGGCACTAA
NONE
OsAffx.5514.1.S1_x_at--59--8213Chr12:4995895..4995919 (25 bp)
GGAAGTGCTCAAGCTCGATGCATCC
NONE
OsAffx.5514.1.S1_x_at--563--8454Chr12:4995800..4995892 (25 bp)
TGGCCACGTGACAATCTAATGCATC
NONE
OsAffx.5514.1.S1_x_at--387--8592Chr12:4995772..4995795 (24 bp)
TGGTCAAGCTCTACACTCTAAGGTG
NONE
OsAffx.5514.1.S1_x_at--1157--6574Chr12:4995463..4995487 (25 bp)
GATTGGGAAGGCCAGACCCGATTCT
NONE
Target Sequence 
AAAGACAGTTTCATACACCACTCCATGAAGGGCTGGAGGCTGGATTAGATACAAAAGCTATCTTGAAAAGTGGTATGAAA
GTTGGCCTAATATCTCCAAAAAGTGGAAAAATGGTTGCTCTAGGTACCATTCAGAAGACCGACAAAAACGCTATTTCTGT
TGATGGCCAGGCACTAAATGATTGTGTTGACATCCTTGTTAACATTGTATTCAATCAGCACACCATAATACCTCGTGCAT
ATGGAATGATCAGCAAGTTAGGAAGTGCTCAAGCTCGATGCATCCCATGGCCACGTGACAATCTAATGCATCCAAGTGGT
CAAGCTCTACACTCTAAGGTGTCGACTATTGCGAGACATAACTCAGCTAACCAAGGAAATTCGGTGGCACTAACTGAGGT
GTTCAAGCACAATAGCATTGATAATGCACTGCAAAGTGTTGTTGGACACAAGAGAGAGGTGCATGATCTAACACCAAAGA
AGAATATAGGACGTGAAGATACACATTCTAGGGCAAAGAAGATTGGGAAGGCCAGACCCGATTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5514.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis