Browse Element(s) Details


OsAffx.12532.1.S1_at

Description tigr:9630.m04572
TID=OsAffx.12532.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AY087388 secretory carrier membrane protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g470102/11secretory carrier membrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46956Os.37986.1.S1_at11/112+28663177..28666484expressed protein
LOC_Os02g46956OsAffx.32273.1.S1_at9/112+28663177..28666484expressed protein
LOC_Os02g46956OsAffx.19953.6.S1_s_at3/112+28663177..28666484expressed protein
LOC_Os02g46962Os.11656.1.S1_at11/112+28667136..28670993VHS domain-containing protein, putative, expressed
LOC_Os02g46970Os.4377.1.S1_at11/112+28671336..286749954-coumarate-CoA ligase 2, putative, expressed
LOC_Os02g46980Os.5377.1.S1_at11/112+28675812..28677978pentatricopeptide, putative, expressed
LOC_Os02g46980Os.5377.2.S1_x_at10/112+28675812..28677978pentatricopeptide, putative, expressed
LOC_Os02g46980OsAffx.23312.1.S1_s_at2/112+28675812..28677978pentatricopeptide, putative, expressed
LOC_Os02g46980Os.5391.1.S1_at1/112+28675812..28677978pentatricopeptide, putative, expressed
LOC_Os02g46990Os.12949.1.S1_at11/112+28683631..28688289ATPase, AAA family protein, expressed
LOC_Os02g47000Os.10594.1.S1_at11/112+28688829..28690578expressed protein
LOC_Os02g47010Os.5837.1.S1_at10/112+28690809..28694497secretory carrier membrane protein, putative, expressed
LOC_Os02g47010OsAffx.12532.1.S1_at2/112+28690809..28694497secretory carrier membrane protein, putative, expressed
LOC_Os02g47020Os.46383.2.A1_s_at11/112+28695935..28698540Phosphoribulokinase, chloroplast precursor, putative, expressed
LOC_Os02g47030Os.25469.1.S1_at11/112+28698849..28700331expressed protein
LOC_Os02g47040OsAffx.16663.1.S1_s_at11/112+28700618..28702204hypothetical protein
LOC_Os02g47040OsAffx.16663.4.S1_at11/112+28700618..28702204hypothetical protein
LOC_Os02g47040OsAffx.16663.1.S1_x_at5/112+28700618..28702204hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045045biological_processsecretory pathway
GO:0005739cellular_componentmitochondrion
GO:0005386molecular_functioncarrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12532.1.S1_at--897--10231Chr02:28693003..28693027 (25 bp)
TATTGGCTGCAATTGACACCTTCTC
LOC_Os02g47010
OsAffx.12532.1.S1_at--1081--8991Chr02:28693034..28693242 (25 bp)
TGCAATAGTCGGGATCTTTTACTTT
LOC_Os02g47010
OsAffx.12532.1.S1_at--110--8831Chr02:28694528..28694552 (25 bp)
TGATTGGTCTGTTGGCCTACGACAA
NONE
OsAffx.12532.1.S1_at--568--1371Chr02:28694552..28694576 (25 bp)
AGAGCCATGCTCGTTGGAACCAGAA
NONE
OsAffx.12532.1.S1_at--578--931Chr02:28694626..28694650 (25 bp)
AGGAATCTTGCACTCCTTGGAGATT
NONE
OsAffx.12532.1.S1_at--254--10871Chr02:28694642..28694666 (25 bp)
TTGGAGATTCAGCTTCCGCCGAACT
NONE
OsAffx.12532.1.S1_at--226--10651Chr02:28694655..28694679 (25 bp)
TTCCGCCGAACTTGGGATCAGGTGC
NONE
OsAffx.12532.1.S1_at--118--7973Chr12:24749888..24749912 (25 bp)
GGATCAGGTGCAGTCCCAACTACAA
NONE
OsAffx.12532.1.S1_at--605--3251Chr02:28694685..28694709 (25 bp)
CAACTACAACTGCTGAACTTGGGAT
NONE
OsAffx.12532.1.S1_at--989--10151Chr02:28695008..28695364 (25 bp)
TATCATATTTTTCCCAGTGACGCGG
NONE
OsAffx.12532.1.S1_at--725--8071Chr02:28695473..28695497 (25 bp)
GGAGCAGCATCAGCGATATCCAGCC
NONE
Target Sequence 
TATTGGCTGCAATTGACACCTTCTCTGATCATGCAATAGTCGGGATCTTTTACTTTGTCGGATTTGCCTTGTTTTGCTTG
GAGACACTTGTGAGCATTTGGGTTCTTCAGTTCAATTTTACGGTTGATTGGTCTGTTGGCCTACGACAAGAGCCATGCTC
GTTGGAACCAGAAGACAGCAACCCATCTGTCTGGGGATCTCATTTGTGCTTTGAGACTTGGAAGGAATCTTGCACTCCTT
GGAGATTCAGCTTCCGCCGAACTTGGGATCAGGTGCAGTCCCAACTACAACTGCTGAACTTGGGATCAGCAAATACAGAA
CCAAATGAGGCTGTTTATCATATTTTTCCCAGTGACGCGGCTGCTGATGAAGTGATGAGGTGCTCACCTGCTGCCACGAG
ATTACGCGTGGACTGCGTTGGTGGGCTAGATGTACATATATGGTGCACAGCAAACAGCAAGGTTGAAGGGAGCAGCATCA
GCGATATCCAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12532.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis