Browse Element(s) Details


OsAffx.11745.1.S1_at

Description tigr:9629.m06509
TID=OsAffx.11745.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6564011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65600Os.26297.1.S1_at11/111+38408524..38412329PHD-finger family protein, expressed
LOC_Os01g65610OsAffx.16663.1.S1_s_at11/111+38415444..38421051hypothetical protein
LOC_Os01g65610OsAffx.16663.1.S1_x_at7/111+38415444..38421051hypothetical protein
LOC_Os01g65620Os.57203.1.S1_at11/111+38425786..38426477expressed protein
LOC_Os01g65630Os.11443.1.S1_a_at11/111+38428398..38429840expressed protein
LOC_Os01g65640OsAffx.11745.1.S1_at11/111+38433709..38434251hypothetical protein
LOC_Os01g65650Os.12640.1.S1_at11/111+38438961..38445515Leucine Rich Repeat family protein, expressed
LOC_Os01g65650Os.12640.2.S1_at11/111+38438961..38445515Leucine Rich Repeat family protein, expressed
LOC_Os01g65660Os.17259.1.S1_at11/111+38444788..38447609amino acid permease, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11745.1.S1_at--623--9431Chr01:38433752..38433776 (25 bp)
TCGGACCATCAAAGAGGCCCGGGAG
LOC_Os01g65640
OsAffx.11745.1.S1_at--811--10691Chr01:38433813..38433837 (25 bp)
TTGCCACACGGGTGAGCTCGAGGAC
LOC_Os01g65640
OsAffx.11745.1.S1_at--1141--4792Chr03:7567479..7567835 (25 bp)
GCTCGAGGACGAAGATCCCAGTCGC
NONE
OsAffx.11745.1.S1_at--646--4111Chr01:38433837..38433861 (25 bp)
CGAAGATCCCAGTCGCAGCGAGGTG
LOC_Os01g65640
OsAffx.11745.1.S1_at--248--1151Chr01:38433847..38433871 (25 bp)
AGTCGCAGCGAGGTGAGCGACCTCA
LOC_Os01g65640
OsAffx.11745.1.S1_at--1046--7751Chr01:38433858..38433882 (25 bp)
GGTGAGCGACCTCAACCGCATCGCG
LOC_Os01g65640
OsAffx.11745.1.S1_at--336--5171Chr01:38433902..38433926 (25 bp)
GCAAGCACGCACTCGTCTTAGCAGT
LOC_Os01g65640
OsAffx.11745.1.S1_at--350--9411Chr01:38433914..38433938 (25 bp)
TCGTCTTAGCAGTCCTCGAGCTTCG
LOC_Os01g65640
OsAffx.11745.1.S1_at--382--9331Chr01:38433984..38434008 (25 bp)
TCGCGCCGTTCCCACTTTGATGTTG
LOC_Os01g65640
OsAffx.11745.1.S1_at--198--4212Chr10:9027462..9027486 (25 bp)
CCCCGGAGGAGCCAAGCCTCAGATG
NONE
OsAffx.11745.1.S1_at--9--1651Chr01:38434097..38434121 (25 bp)
AGCGAGGACGCTACCGTCGTCGTGT
LOC_Os01g65640
Target Sequence 
TCGGACCATCAAAGAGGCCCGGGAGGTGGCGGCGGCGGCGACACGGTAGAAGGGGAGGACGTTGCCACACGGGTGAGCTC
GAGGACGAAGATCCCAGTCGCAGCGAGGTGAGCGACCTCAACCGCATCGCGCCCGCCGTCGACGACCCACGCAAGCACGC
ACTCGTCTTAGCAGTCCTCGAGCTTCGCCACCCAGCTGCCGCCCACGACTCCCGCGCACGGTTGCTTCCTGCTCGCGCCG
TTCCCACTTTGATGTTGCCTCCCCGGAGGAGCCAAGCCTCAGATGGGGATGGCGATGGCGAGGTGGCTCGAGGGCACCAC
GACGATGAGCAACGGGGACGGGGAGAGCGAGGACGCTACCGTCGTCGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11745.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis