Browse Element(s) Details


OsAffx.30194.1.S1_x_at

Description tigr:9637.m03310
TID=OsAffx.30194.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3884011/11wall-associated kinase-like 1, putative, expressed
LOC_Os09g388001/11wall-associated kinase-like 1, putative
LOC_Os09g388301/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38790Os.37725.1.A1_s_at11/119+22286696..22291247Zinc finger, C2H2 type family protein, expressed
LOC_Os09g38790Os.8410.1.S1_at11/119+22286696..22291247Zinc finger, C2H2 type family protein, expressed
LOC_Os09g38800OsAffx.30194.2.S1_at11/119+22291930..22295105wall-associated kinase-like 1, putative
LOC_Os09g38800OsAffx.30194.1.S1_x_at1/119+22291930..22295105wall-associated kinase-like 1, putative
LOC_Os09g38814OsAffx.21820.1.S1_at2/119+22298687..22299046NA
LOC_Os09g38814OsAffx.21820.1.S1_x_at1/119+22298687..22299046NA
LOC_Os09g38830OsAffx.18050.1.S1_at11/119+22302503..22309699Protein kinase domain containing protein
LOC_Os09g38830OsAffx.30194.1.S1_x_at1/119+22302503..22309699Protein kinase domain containing protein
LOC_Os09g38830Os.50240.1.S1_at1/119+22302503..22309699Protein kinase domain containing protein
LOC_Os09g38840OsAffx.30194.1.S1_x_at11/119+22311184..22314011wall-associated kinase-like 1, putative, expressed
LOC_Os09g38840OsAffx.30194.2.S1_at1/119+22311184..22314011wall-associated kinase-like 1, putative, expressed
LOC_Os09g38850Os.25404.1.A1_at6/119+22315284..22318271wall-associated kinase-like 1, putative, expressed
LOC_Os09g38860OsAffx.18052.1.S1_at11/119+22318388..22320008hypothetical protein
LOC_Os09g38870OsAffx.6521.1.S1_at11/119+22324708..22327628hypothetical protein
LOC_Os09g38880OsAffx.18053.1.S1_at11/119+22328946..22329182hypothetical protein
LOC_Os09g38890OsAffx.6522.1.S1_at11/119+22331328..22333002hypothetical protein
LOC_Os09g38890Os.49759.1.S1_x_at1/119+22331328..22333002hypothetical protein
LOC_Os09g38900Os.48092.1.A1_at11/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38900Os.35344.18.S1_x_at10/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38900Os.35344.3.S1_x_at9/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38900OsAffx.22940.5.S1_x_at3/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38900OsAffx.22940.5.S1_at2/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30194.1.S1_x_at--42--572Chr09:22313421..22313445 (25 bp)
ATCCTATTGGATGGCTCACTAACGA
LOC_Os09g38840
OsAffx.30194.1.S1_x_at--10--2052Chr12:17479931..17480371 (25 bp)
ACTTTGGAGCTTCAAGGTGTATCCC
NONE
OsAffx.30194.1.S1_x_at--841--7931Chr09:22313526..22313550 (25 bp)
GGATACCTAGATCCCATGTACTACT
LOC_Os09g38840
OsAffx.30194.1.S1_x_at--832--5991Chr09:22313655..22313679 (25 bp)
GAGAGCCTTGTTGCACATTTCACTA
LOC_Os09g38840
OsAffx.30194.1.S1_x_at--744--652Chr09:22313686..22313710 (25 bp)
ATGCACATGGCAACTTGGGTGACAT
LOC_Os09g38840
OsAffx.30194.1.S1_x_at--305--7371Chr09:22313704..22313728 (25 bp)
GTGACATATTTGATGCGCAGGTTAT
LOC_Os09g38840
OsAffx.30194.1.S1_x_at--1055--1991Chr09:22313831..22313855 (25 bp)
ACTCGAGAGCATTCGATCATCATCA
LOC_Os09g38840
OsAffx.30194.1.S1_x_at--173--9392Chr09:22313843..22313867 (25 bp)
TCGATCATCATCACTGCAGCAAGAA
LOC_Os09g38840
OsAffx.30194.1.S1_x_at--415--451Chr09:22313894..22313918 (25 bp)
ATCTAAGGAGCTTCATGTCTCATGG
LOC_Os09g38840
OsAffx.30194.1.S1_x_at--328--6131Chr09:22313934..22313958 (25 bp)
GAGGGTACAAGCTTAGATTCAACTA
LOC_Os09g38840
OsAffx.30194.1.S1_x_at--910--6551Chr09:22313949..22313973 (25 bp)
GATTCAACTAGGCAATATAGTCTCG
LOC_Os09g38840
Target Sequence 
ATCCTATTGGATGGCTCACTAACGACAAAAGTCTCAGACTTTGGAGCTTCAAGGTGTATCCCAGCTGAACAAAATGGGGT
TACAACTGCTATTCAAGGAACACTAGGATACCTAGATCCCATGTACTACTACACAGGACGTCTCACGGAGAAGAGTGATA
TTTATAGCTTTGGAGTTGTTTTAATGGAGTTGCTTACTAGGAAAAAACCACACTCATATAGATCGGCTGAGGATGAGAGC
CTTGTTGCACATTTCACTACCCTACATGCACATGGCAACTTGGGTGACATATTTGATGCGCAGGTTATGGAGGAGGGGAA
AAAGGAAGTTAATGAAGTAGCCGTATTAGCTGTGGCATGTGTCAAGTTAAAAGCAGAAGAGCGACCGACTATGAGACAGG
TGGAAATGACACTCGAGAGCATTCGATCATCATCACTGCAGCAAGAAGTATTGCATAGTGTTAGCACAAAGAAATCTAAG
GAGCTTCATGTCTCATGGAGCCATGCAATAAGTGAGGGTACAAGCTTAGATTCAACTAGGCAATATAGTCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30194.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis