Browse Element(s) Details


Os.26972.1.S1_at

Description gb:AK065464.1
DB_XREF= gi:32975482
TID=Os.26972.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26972 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013020H24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013020H24, full insert sequence.
FL= gb:AK065464.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3896011/11Potassium transporter 11, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38900Os.48092.1.A1_at11/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38900Os.35344.18.S1_x_at10/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38900Os.35344.3.S1_x_at9/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38900OsAffx.22940.5.S1_x_at3/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38900OsAffx.22940.5.S1_at2/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38910Os.54238.1.S1_at11/119+22348258..22350996wall-associated kinase-like 1, putative, expressed
LOC_Os09g38920Os.20853.1.S1_at11/119+22351167..22353066Papain family cysteine protease containing protein, expressed
LOC_Os09g38920OsAffx.22518.1.S1_x_at1/119+22351167..22353066Papain family cysteine protease containing protein, expressed
LOC_Os09g38930OsAffx.18054.1.S1_at11/119+22354475..22356685expressed protein
LOC_Os09g38940OsAffx.18924.2.S1_x_at7/119+22358487..22360363hypothetical protein
LOC_Os09g38940OsAffx.19842.1.S1_at3/119+22358487..22360363hypothetical protein
LOC_Os09g38940OsAffx.18924.3.S1_at1/119+22358487..22360363hypothetical protein
LOC_Os09g38940OsAffx.19421.1.S1_at1/119+22358487..22360363hypothetical protein
LOC_Os09g38950Os.52564.1.S1_at6/119+22361130..22366210retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g38950Os.14444.1.S1_at1/119+22361130..22366210retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g38960Os.26972.1.S1_at11/119+22367307..22373131Potassium transporter 11, putative, expressed
LOC_Os09g38960OsAffx.18389.1.S1_at1/119+22367307..22373131Potassium transporter 11, putative, expressed
LOC_Os09g38970Os.18044.1.S1_s_at11/119+22376424..22381905DHHC zinc finger domain containing protein, expressed
LOC_Os09g38980Os.27250.1.S1_at11/119+22382445..22386547RuBisCO subunit binding-protein alpha subunit, chloroplast precursor, putative, expressed
LOC_Os09g38990NANA9+22387273..22390065hypothetical protein
LOC_Os09g39000OsAffx.18055.1.S1_at11/119+22390829..22392247F-box protein interaction domain containing protein
LOC_Os09g39010NANA9+22396042..22396463NA

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0009605biological_processresponse to external stimulus
GO:0015079molecular_functionpotassium ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26972.1.S1_at--10--6291Chr09:22367932..22367956 (25 bp)
GATGTTGTTCGATAGCCTGATTCTG
LOC_Os09g38960
Os.26972.1.S1_at--997--5771Chr09:22367865..22367889 (25 bp)
GACGAGTACAGCACCCTGATGATGA
LOC_Os09g38960
Os.26972.1.S1_at--286--8871Chr09:22367846..22367870 (25 bp)
TGATGAGCCTCCCAAATAACCCAGG
LOC_Os09g38960
Os.26972.1.S1_at--674--671Chr09:22367750..22367774 (25 bp)
ATGACTCCATTGTGCCGGTGAACTC
LOC_Os09g38960
Os.26972.1.S1_at--642--2171Chr09:22367597..22367621 (25 bp)
ACACGGTGATCAGAGCTCGCAGGGA
LOC_Os09g38960
Os.26972.1.S1_at--226--3791Chr09:22367582..22367606 (25 bp)
CTCGCAGGGATTCAGGGTTCGTCAA
LOC_Os09g38960
Os.26972.1.S1_at--35--2031Chr09:22367543..22367567 (25 bp)
ACTACATGTATGCTTTCCTGAGGAA
LOC_Os09g38960
Os.26972.1.S1_at--825--5491Chr09:22367506..22367530 (25 bp)
GAACAGTGCCATCTTCAATGTGCCT
LOC_Os09g38960
Os.26972.1.S1_at--959--771Chr09:22367489..22367513 (25 bp)
ATGTGCCTCATGAGAGCATGCTCAA
LOC_Os09g38960
Os.26972.1.S1_at--352--731Chr09:22367465..22367489 (25 bp)
ATGTTGGGCAGGTTTTCTACGTGTA
LOC_Os09g38960
Os.26972.1.S1_at--530--7411Chr09:22367399..22367423 (25 bp)
GTGATTGTATCATTCAGACCGACTT
LOC_Os09g38960
Target Sequence 
GATGTTGTTCGATAGCCTGATTCTGTTCGTGAGGCTGGAGAGCATGATGGAGGAGTACAGCGACTCCGACGAGTACAGCA
CCCTGATGATGAGCCTCCCAAATAACCCAGGGATCAGCAATGGCGGCGTGACCACCACCGGCACCAACAATGTCATGGAG
GTGATGAGCTGCACGTCGACCCATGACTCCATTGTGCCGGTGAACTCCAGGTCCGACGACACGGGCAGCAGCCAGGTGAT
GCCGGCGTCGGGGCAGATGGCGTTCCAGAGCGTCGGCGACGAGATCGCGTTCCTGAACGCGTGCAGGGACGCCGGGGTGG
TGCACATCCTCGGGAACACGGTGATCAGAGCTCGCAGGGATTCAGGGTTCGTCAAGAAGATTGTCATCAACTACATGTAT
GCTTTCCTGAGGAAGATCTGCAGGGAGAACAGTGCCATCTTCAATGTGCCTCATGAGAGCATGCTCAATGTTGGGCAGGT
TTTCTACGTGTAATGTAATCTTAGTAGCACTAGATTGTAAACTAAACATGCATGTGATTGTATCATTCAGACCGACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26972.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis