Browse Element(s) Details


Os.52564.1.S1_at

Description gb:AK068021.1
DB_XREF= gi:32978039
TID=Os.52564.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52564 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013134J17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013134J17, full insert sequence.
FL= gb:AK068021.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0798010/11expressed protein
LOC_Os12g306008/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g160808/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g389506/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07960Os.10765.1.S1_at11/1111+4124435..4126472Transferase family protein, expressed
LOC_Os11g07970Os.26777.1.S1_at10/1111+4130244..4136381F-box domain containing protein, expressed
LOC_Os11g07980Os.52564.1.S1_at10/1111+4145989..4150642expressed protein
LOC_Os11g07980Os.55401.1.S1_at9/1111+4145989..4150642expressed protein
LOC_Os11g08000NANA11+4155148..4157123hypothetical protein
LOC_Os11g08009NANA11+4158502..4158585NA
LOC_Os11g08020OsAffx.30872.1.S1_s_at11/1111+4164096..4171065ankyrin repeat family protein, putative, expressed
LOC_Os11g08029NANA11+4174430..4175580NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52564.1.S1_at--713--391Chr11:4146514..4146538 (25 bp)
ATCAGGGACAATAGTCTCCTCTCTC
LOC_Os11g07980
Os.52564.1.S1_at--417--5771Chr11:4146425..4146449 (25 bp)
GACGATCCTTGTAAATCTGGCCCAG
LOC_Os11g07980
Os.52564.1.S1_at--907--2931Chr11:4146286..4146310 (25 bp)
AAGGCGACCGTGTTAGTTAGCATGA
LOC_Os11g07980
Os.52564.1.S1_at--1121--40711Chr09:22364822..22364846 (25 bp)
CGACCTGACAGCTTGCATGCATGTA
LOC_Os09g38950
Os.52564.1.S1_at--633--5713Chr09:22364879..22364903 (25 bp)
ATCCATGCGGATCAGGTTAGCCTTT
LOC_Os09g38950
Os.52564.1.S1_at--991--36713Chr09:22364900..22364924 (25 bp)
CTTTCCTCCACATGCGATAACAGAT
LOC_Os09g38950
Os.52564.1.S1_at--689--103112Chr09:22364941..22364965 (25 bp)
TTTCTGTTTTCTGTTACTGCATGCA
LOC_Os09g38950
Os.52564.1.S1_at--342--35313Chr09:22364960..22364984 (25 bp)
CATGCAGTCGTTTCATCAATCTCGG
LOC_Os09g38950
Os.52564.1.S1_at--869--97312Chr06:7392525..7392549 (25 bp)
TCAATCTCGGCTTCGGTTGTTCTCA
NONE
Os.52564.1.S1_at--1020--75713Chr09:22365030..22365054 (25 bp)
GGGCTGTTCCCATCACATATATATT
LOC_Os09g38950
Os.52564.1.S1_at--1036--9912Chr06:7392623..7392647 (25 bp)
AGGATTAGTGCGATCGTTTCCACCC
NONE
Target Sequence 
ATCAGGGACAATAGTCTCCTCTCTCGCCGGAACTCGGCGATGGACACACCTCTGCACTGCGCNGGCGAGGGCAGGGCACG
CCGGCACCGTGACGATCCTTGTAAATCTGGCCCAGGACTGCGAGGAGAATATCCTGGGATGCCAGAACGCGGCCGGGGAC
ACGGCCCTACACATGGCAGCGAGGCACGGGCATGGCGCCACCGTGGAGGCTCTTGTCGTGGCACGTGCGAAGGCGACCGT
GTTAGTTAGCATGAAAGGTTCGGATCATGTGATGACGACCTGACAGCTTGCATGCATGTAGTTGTTGAGGTTAGTTTGGA
TTAGGTTAGTCTATCCATGCGGATCAGGTTAGCCTTTCCTCCACATGCGATAACAGATGTTTGTTAGAGTTTGTTTTCTG
TTTTCTGTTACTGCATGCAGTCGTTTCATCAATCTCGGCTTCGGTTGTTCTCAGCTGCGCCGAACTCTGTATCGCCACGA
TGGGGGCTGTTCCCATCACATATATATTAACACGAAGGCGACGCACAGGATTAGTGCGATCGTTTCCACCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52564.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis