Browse Element(s) Details


Os.26777.1.S1_at

Description gb:AK112089.1
DB_XREF= gi:37988752
TID=Os.26777.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26777 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-105-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-F05, full insert sequence.
FL= gb:AK112089.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0797010/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07940Os.22793.1.S1_at10/1111+4098869..4106094expressed protein
LOC_Os11g07950Os.49489.1.S1_at10/1111+4118397..4119430expressed protein
LOC_Os11g07960Os.10765.1.S1_at11/1111+4124435..4126472Transferase family protein, expressed
LOC_Os11g07970Os.26777.1.S1_at10/1111+4130244..4136381F-box domain containing protein, expressed
LOC_Os11g07980Os.52564.1.S1_at10/1111+4145989..4150642expressed protein
LOC_Os11g07980Os.55401.1.S1_at9/1111+4145989..4150642expressed protein
LOC_Os11g08000NANA11+4155148..4157123hypothetical protein
LOC_Os11g08009NANA11+4158502..4158585NA

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26777.1.S1_at--71--2331Chr11:4130767..4130791 (25 bp)
AAAGAAAAGCGTCCGCCAGGTTGCT
LOC_Os11g07970
Os.26777.1.S1_at--1109--4331Chr11:4130752..4130776 (25 bp)
CCAGGTTGCTCCAAATGCGCGGCTT
LOC_Os11g07970
Os.26777.1.S1_at--280--8391Chr11:4130652..4130676 (25 bp)
GGCGAAAACTACATCCGTGTCTGGA
LOC_Os11g07970
Os.26777.1.S1_at--660--7391Chr11:4130636..4130660 (25 bp)
GTGTCTGGAAGTTTCGCCCGAAGAG
LOC_Os11g07970
Os.26777.1.S1_at--872--6731Chr11:4130612..4130636 (25 bp)
GTTCTTAGAATGATCATCCGGAGCC
LOC_Os11g07970
Os.26777.1.S1_at--130--9291Chr11:4130596..4130620 (25 bp)
TCCGGAGCCAGACACTTTGTTATGA
LOC_Os11g07970
Os.26777.1.S1_at--723--731Chr11:4130532..4130556 (25 bp)
ATGTTCTGCATCTGTCAATGCCAGA
LOC_Os11g07970
Os.26777.1.S1_at--422--7911Chr11:4130419..4130443 (25 bp)
GGTTGTTTCAGTTCTCACAGGATAC
LOC_Os11g07970
Os.26777.1.S1_at--308--331Chr11:4130398..4130422 (25 bp)
ATACTCAAGTTGTAGGTGCACTCAA
LOC_Os11g07970
Os.26777.1.S1_at--654--1871Chr11:4130324..4130348 (25 bp)
GGTTCCTTAAACTGGTGGCTTGCCA
LOC_Os11g07970
Os.26777.1.S1_at--939--5691NONE
GACTTTTTCCTACTGCATTGTTTTG
NONE
Target Sequence 
AAAGAAAAGCGTCCGCCAGGTTGCTCCAAATGCGCGGCTTGACAACATCCCCACACGCCTGCGCCCTCAGATCACTTGCC
TGGCAGTAGGCATGAAGAAAATTGTGACCACACATGGCGAAAACTACATCCGTGTCTGGAAGTTTCGCCCGAAGAGTTCT
TAGAATGATCATCCGGAGCCAGACACTTTGTTATGATGCTTAACGACCCCCCTTTTTGTAAAATTAGACGAAAATATGTT
CTGCATCTGTCAATGCCAGATAGTATGCCATGCTGTTGTGTTGTGCAAAAATATTTGTTGTATCAGGAGTTATGTTGAAT
TAATCTCATACCTTTACAAATTATTGTTGGTTGTTTCAGTTCTCACAGGATACTCAAGTTGTAGGTGCACTCAAATATCA
ATATTAGCAGGTTCTTTTTTTCATTTTGAGTGGAGGATTAGAAGGTTCCTTAAACTGGTGGCTTGCCACANTAACAGTAC
GATTTCTCAAAAGACTTTTTCCTACTGCATTGTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26777.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis