Browse Element(s) Details


Os.49489.1.S1_at

Description gb:AK107888.1
DB_XREF= gi:32993097
TID=Os.49489.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49489 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-E03, full insert sequence.
FL= gb:AK107888.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0795010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07930Os.25496.1.S1_at11/1111+4093522..4097409oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g07940Os.22793.1.S1_at10/1111+4098869..4106094expressed protein
LOC_Os11g07950Os.49489.1.S1_at10/1111+4118397..4119430expressed protein
LOC_Os11g07960Os.10765.1.S1_at11/1111+4124435..4126472Transferase family protein, expressed
LOC_Os11g07970Os.26777.1.S1_at10/1111+4130244..4136381F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49489.1.S1_at--742--5391Chr11:4118911..4118935 (25 bp)
GAAGCTGATCACGACGAGCCCGCGG
LOC_Os11g07950
Os.49489.1.S1_at--531--3831Chr11:4118863..4118887 (25 bp)
CTGCTCCCGTTGCTCCGGAGGAAAG
LOC_Os11g07950
Os.49489.1.S1_at--381--9251Chr11:4118782..4118806 (25 bp)
TCCTCCGGCAGCTTCAGGTCGGACG
LOC_Os11g07950
Os.49489.1.S1_at--556--4711Chr11:4118644..4118668 (25 bp)
GCGGCCAGTGGCAGCTGGTTCTTCT
LOC_Os11g07950
Os.49489.1.S1_at--663--3631Chr11:4118624..4118648 (25 bp)
CTTCTGATCATCATGTCGCCATTGT
LOC_Os11g07950
Os.49489.1.S1_at--571--171Chr11:4118531..4118555 (25 bp)
ATTTTTGCGTTTTGTTGCGTGGTGA
LOC_Os11g07950
Os.49489.1.S1_at--531--6171Chr11:4118508..4118532 (25 bp)
GAGGATGAGAGAGCCCAGTTCGATC
LOC_Os11g07950
Os.49489.1.S1_at--760--6711Chr11:4118491..4118515 (25 bp)
GTTCGATCGATTACATCAGACTGGT
LOC_Os11g07950
Os.49489.1.S1_at--627--5491Chr11:4118428..4118452 (25 bp)
GAACAGTTTACATACTCCATTGCAT
LOC_Os11g07950
Os.49489.1.S1_at--80--3571Chr11:4118418..4118442 (25 bp)
CATACTCCATTGCATTTCATTTTAG
LOC_Os11g07950
Os.49489.1.S1_at--714--10551NONE
TTCATTTTAGTAGGGAGTCCACTCT
NONE
Target Sequence 
GAAGCTGATCACGACGAGCCCGCGGCGGCGCCGGCGTACGGGTGCTTCCTGCTCCCGTTGCTCCGGAGGAAAGGCAGCAG
CAAGAAACGCGGCGGCGGCGGGTATTCGTCCGGCTCCGGCGGCTCGAGCTCCTCCGGCAGCTTCAGGTCGGACGGCGAGC
CGGGCGGTGGGCTGCGGCGGTCGGCGTCGTCGTCTTTCTCCTTCGCTCGCGGCGGCGGCAACCGGATCAGGCTCGCCGCC
GGAGCGAGGCANCAGGAGGAGGTGGAGGCGGCCAGTGGCAGCTGGTTCTTCTGATCATCATGTCGCCATTGTTGATTTGA
TCAAGTTAAAGTTGTGAAGGATTTATTAGCTAGGAGAAATTAAAGGAATTAGCAGCTTTAATTTTTGCGTTTTGTTGCGT
GGTGAGGATGAGAGAGCCCAGTTCGATCGATTACATCAGACTGGTGGNNGTTTGTGTGTGTCATGTGTAAAGAAGATAGA
CATGAACAGTTTACATACTCCATTGCATTTCATTTTAGTAGGGAGTCCACTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49489.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis