Browse Element(s) Details


Os.10765.1.S1_at

Description gb:AK099589.1
DB_XREF= gi:32984798
TID=Os.10765.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10765 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-045-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013043H09, full insert sequence.
FL= gb:AK099589.1 gb:AK104889.1 gb:AK060023.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0796011/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07940Os.22793.1.S1_at10/1111+4098869..4106094expressed protein
LOC_Os11g07950Os.49489.1.S1_at10/1111+4118397..4119430expressed protein
LOC_Os11g07960Os.10765.1.S1_at11/1111+4124435..4126472Transferase family protein, expressed
LOC_Os11g07970Os.26777.1.S1_at10/1111+4130244..4136381F-box domain containing protein, expressed
LOC_Os11g07980Os.52564.1.S1_at10/1111+4145989..4150642expressed protein
LOC_Os11g07980Os.55401.1.S1_at9/1111+4145989..4150642expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10765.1.S1_at--172--8811Chr11:4124902..4124926 (25 bp)
TGATTGGCCGCCTAAACGACGACGA
LOC_Os11g07960
Os.10765.1.S1_at--901--9131Chr11:4124872..4124896 (25 bp)
TGCGGTCGGCGATCGACTACAACGA
LOC_Os11g07960
Os.10765.1.S1_at--945--6391Chr11:4124831..4124855 (25 bp)
GATCGTCCGGACAATGGCAGCCTGC
LOC_Os11g07960
Os.10765.1.S1_at--635--4711Chr11:4124782..4124806 (25 bp)
GCTGGCTGGGCATTCCGCTGTACGA
LOC_Os11g07960
Os.10765.1.S1_at--990--1151Chr11:4124710..4124734 (25 bp)
AGTCATTGCGCGGAGGGTTCTTCTA
LOC_Os11g07960
Os.10765.1.S1_at--38--1651Chr11:4124590..4124614 (25 bp)
AGCGATTGCTTCGTGCCAAGTTTGT
LOC_Os11g07960
Os.10765.1.S1_at--398--4391Chr11:4124576..4124600 (25 bp)
GCCAAGTTTGTGTACCCGAGGATTT
LOC_Os11g07960
Os.10765.1.S1_at--861--6611Chr11:4124535..4124559 (25 bp)
GTTGGCTTTGTTGGAGTCTCTCTTC
LOC_Os11g07960
Os.10765.1.S1_at--1133--3771Chr11:4124511..4124535 (25 bp)
CTCTGTGTTGTGTAAGCGCATATTT
LOC_Os11g07960
Os.10765.1.S1_at--8--4591Chr11:4124496..4124520 (25 bp)
GCGCATATTTATTGGGACTAGCTAC
LOC_Os11g07960
Os.10765.1.S1_at--540--5651Chr11:4124462..4124486 (25 bp)
GACAGAAAATCCCACGTTGCATCTT
LOC_Os11g07960
Target Sequence 
TGATTGGCCGCCTAAACGACGACGAGATGCTGCGGTCGGCGATCGACTACAACGAGATGGCGGGGATGCCCGATCGTCCG
GACAATGGCAGCCTGCCGGAGACGGAGCTGCGGGTGGTGAGCTGGCTGGGCATTCCGCTGTACGACGCGGTGGACTTCGG
GTGGGGGAAGCCATGGGCGATGTCCCGTGCGGAGTCATTGCGCGGAGGGTTCTTCTACGTGATGGACGGCGGGGCAGCGG
ATGGTGACGGCGGGGACGCCGCCGCCGTGCGGGTGCTCATGTGTATGGAGGCTGCAAATGTGGAGGAGTTCGAGCGATTG
CTTCGTGCCAAGTTTGTGTACCCGAGGATTTGATTTAGCATGTGTCGGTTGGCTTTGTTGGAGTCTCTCTTCTCTGTGTT
GTGTAAGCGCATATTTATTGGGACTAGCTACACAATTTATGACAGAAAATCCCACGTTGCATCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10765.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis