Browse Element(s) Details


Os.55401.1.S1_at

Description gb:AK108012.1
DB_XREF= gi:32993221
TID=Os.55401.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55401 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-H06, full insert sequence.
FL= gb:AK108012.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g079809/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07960Os.10765.1.S1_at11/1111+4124435..4126472Transferase family protein, expressed
LOC_Os11g07970Os.26777.1.S1_at10/1111+4130244..4136381F-box domain containing protein, expressed
LOC_Os11g07980Os.52564.1.S1_at10/1111+4145989..4150642expressed protein
LOC_Os11g07980Os.55401.1.S1_at9/1111+4145989..4150642expressed protein
LOC_Os11g08000NANA11+4155148..4157123hypothetical protein
LOC_Os11g08009NANA11+4158502..4158585NA
LOC_Os11g08020OsAffx.30872.1.S1_s_at11/1111+4164096..4171065ankyrin repeat family protein, putative, expressed
LOC_Os11g08029NANA11+4174430..4175580NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55401.1.S1_at--230--7091NONE
GTCAAGTCGCTGAAGGCTGCCAAGA
NONE
Os.55401.1.S1_at--65--871Chr11:4147691..4147715 (25 bp)
ATGGCGCTAGTGTCAGGGAAGAATC
LOC_Os11g07980
Os.55401.1.S1_at--837--6011Chr11:4147592..4147616 (25 bp)
GAGAGATGGCTCCTTGGTTCGCTCT
LOC_Os11g07980
Os.55401.1.S1_at--230--6711Chr11:4147576..4147600 (25 bp)
GTTCGCTCTCGCTCGAGGATAGAAT
LOC_Os11g07980
Os.55401.1.S1_at--977--1811Chr11:4147542..4147566 (25 bp)
ACGATTCGTTCCGTAATTATAAATG
LOC_Os11g07980
Os.55401.1.S1_at--923--2951Chr11:4147485..4147509 (25 bp)
AATGGCACTGGATATTCTCCAACCC
LOC_Os11g07980
Os.55401.1.S1_at--482--10511NONE
TTCTCCAACCCACAAGAGCCAGAAA
NONE
Os.55401.1.S1_at--333--2711Chr11:4147446..4147470 (25 bp)
AAGCACCTTTCTATGGGCTTTCGGC
LOC_Os11g07980
Os.55401.1.S1_at--250--771Chr11:4147434..4147458 (25 bp)
ATGGGCTTTCGGCTTTTAGTTATAG
LOC_Os11g07980
Os.55401.1.S1_at--1047--631Chr11:4147382..4147406 (25 bp)
ATGAAAAAGCCTGCCCTTTGTTTGG
LOC_Os11g07980
Os.55401.1.S1_at--292--6771Chr11:4147363..4147387 (25 bp)
GTTTGGGCTTTAGCTTTTCTGGCTA
LOC_Os11g07980
Target Sequence 
GTCAAGTCGCTGAAGGCTGCCAAGAAGATGGCGCTAGTGTCAGGGAAGAATCTGATGACAGTTGGGAAGAAGAGCAGCAG
GGGCCTAGGGGAGGAAGAGGGCCACCGATGCCCGTCGCCGGCGGCGGAGAGATGGCTCCTTGGTTCGCTCTCGCTCGAGG
ATAGAATTCAAACAAAACGATTCGTTCCGTAATTATAAATGGATTGCATGGTGGGTAATTTGTTATCAAATTTAATGGCA
CTGGATATTCTCCAACCCACAAGAGCCAGAAAAAGCACCTTTCTATGGGCTTTCGGCTTTTAGTTATAGGGTGGCTTAGG
CTTTTTTAAAAGCCAGATGAAAAAGCCTGCCCTTTGTTTGGGCTTTAGCTTTTCTGGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55401.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis