Browse Element(s) Details


OsAffx.30872.1.S1_s_at

Description tigr:9639.m00743
TID=OsAffx.30872.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0802011/11ankyrin repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07980Os.52564.1.S1_at10/1111+4145989..4150642expressed protein
LOC_Os11g07980Os.55401.1.S1_at9/1111+4145989..4150642expressed protein
LOC_Os11g08000NANA11+4155148..4157123hypothetical protein
LOC_Os11g08009NANA11+4158502..4158585NA
LOC_Os11g08020OsAffx.30872.1.S1_s_at11/1111+4164096..4171065ankyrin repeat family protein, putative, expressed
LOC_Os11g08029NANA11+4174430..4175580NA
LOC_Os11g08040OsAffx.18739.1.S1_at11/1111+4178511..4179702hypothetical protein
LOC_Os11g08050OsAffx.18740.1.S1_at11/1111+4180094..4187936hypothetical protein
LOC_Os11g08050Os.34854.1.S1_at10/1111+4180094..4187936hypothetical protein
LOC_Os11g08050OsAffx.32294.1.S1_at1/1111+4180094..4187936hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30872.1.S1_s_at--270--4711Chr11:4164618..4164642 (25 bp)
GCGGCGTTGCACTGCATCTGGGTCT
LOC_Os11g08020
OsAffx.30872.1.S1_s_at--398--491Chr11:4164603..4164627 (25 bp)
ATCTGGGTCTCGCTCGTCAGCCTAA
LOC_Os11g08020
OsAffx.30872.1.S1_s_at--116--5051Chr11:4164531..4164555 (25 bp)
GCAGAATCCATCGTGTACATTGTTA
LOC_Os11g08020
OsAffx.30872.1.S1_s_at--528--3991Chr11:4164520..4164544 (25 bp)
CGTGTACATTGTTATCTACGTGGGC
LOC_Os11g08020
OsAffx.30872.1.S1_s_at--652--511Chr11:4164492..4164516 (25 bp)
ATCGTTTTGTCTCTCTTTGTCGCAC
LOC_Os11g08020
OsAffx.30872.1.S1_s_at--644--10251Chr11:4164477..4164501 (25 bp)
TTTGTCGCACAGTGGATTGGACCTG
LOC_Os11g08020
OsAffx.30872.1.S1_s_at--987--1931Chr11:4164447..4164471 (25 bp)
ACGGCGCGTGCATTCTGGAGGTTTT
LOC_Os11g08020
OsAffx.30872.1.S1_s_at--172--8551Chr11:4164432..4164456 (25 bp)
TGGAGGTTTTTGTGGCTCAGTCACC
LOC_Os11g08020
OsAffx.30872.1.S1_s_at--314--8311Chr11:4164406..4164430 (25 bp)
GGCTCACACCGTCAGGAGGCAGTAT
LOC_Os11g08020
OsAffx.30872.1.S1_s_at--1123--10671Chr11:4164367..4164391 (25 bp)
TTCCATCTACAACTGGCTTCTCTTC
LOC_Os11g08020
OsAffx.30872.1.S1_s_at--618--8511Chr11:4164258..4164282 (25 bp)
TGGAACCCGAACCATATCTCACCTG
LOC_Os11g08020
Target Sequence 
GCGGCGTTGCACTGCATCTGGGTCTCGCTCGTCAGCCTAATCCTGGCCTTCTTCGCGGCCTCCCGTGCCGTGATGAGAAC
CTCGACGGCAGAATCCATCGTGTACATTGTTATCTACGTGGGCATCATCGTTTTGTCTCTCTTTGTCGCACAGTGGATTG
GACCTGTGACGACGGCGCGTGCATTCTGGAGGTTTTTGTGGCTCAGTCACCGGGCTCACACCGTCAGGAGGCAGTATCCG
TTCGCCGTCGCTTCCATCTACAACTGGCTTCTCTTCTTACATATAACTTATATAATGTTTGCTGGTTTGGGAGTGGTACA
TAATCACTCCAATTCGGATCGGGGAGGATTATCAAGCAGCTGGAACCCGAACCATATCTCACCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30872.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis