Browse Element(s) Details


OsAffx.32294.1.S1_at

Description gb:BA000029.2
DB_XREF= gi:47118326
GEN=rps19
TID=OsAffx.32294.1
CNT=1
FEA=DNA_36
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ribosomal protein S19 (Oryza sativa (japonica cultivar-group)) mitochondrion
PROD=Ribosomal protein S19
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g080501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08000NANA11+4155148..4157123hypothetical protein
LOC_Os11g08009NANA11+4158502..4158585NA
LOC_Os11g08020OsAffx.30872.1.S1_s_at11/1111+4164096..4171065ankyrin repeat family protein, putative, expressed
LOC_Os11g08029NANA11+4174430..4175580NA
LOC_Os11g08040OsAffx.18739.1.S1_at11/1111+4178511..4179702hypothetical protein
LOC_Os11g08050OsAffx.18740.1.S1_at11/1111+4180094..4187936hypothetical protein
LOC_Os11g08050Os.34854.1.S1_at10/1111+4180094..4187936hypothetical protein
LOC_Os11g08050OsAffx.32294.1.S1_at1/1111+4180094..4187936hypothetical protein
LOC_Os11g08060Os.33601.3.S1_x_at2/1111+4203932..4206883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08060OsAffx.20631.1.S1_x_at2/1111+4203932..4206883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08060Os.49936.2.A1_at1/1111+4203932..4206883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08070OsAffx.30873.1.S1_at11/1111+4208071..4209931hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32294.1.S1_at--280--8811NONE
TGTTGATGCTTTCCTGTTTAGAATA
NONE
OsAffx.32294.1.S1_at--553--5011Chr11:3215065..3215089 (25 bp)
GCAGGAAAATTTGGTCACGTAGATC
NONE
OsAffx.32294.1.S1_at--84--7111Chr11:3215078..3215102 (25 bp)
GTCACGTAGATCTTCTATTTCGCCG
NONE
OsAffx.32294.1.S1_at--1148--1231Chr11:3215085..3215109 (25 bp)
AGATCTTCTATTTCGCCGGAATTCG
NONE
OsAffx.32294.1.S1_at--1120--191Chr11:3215094..3215118 (25 bp)
ATTTCGCCGGAATTCGTTGATTGCT
NONE
OsAffx.32294.1.S1_at--298--5191Chr11:3215103..3215127 (25 bp)
GAATTCGTTGATTGCTCCGTACTCA
NONE
OsAffx.32294.1.S1_at--686--6591Chr11:3215112..3215136 (25 bp)
GATTGCTCCGTACTCATTTACAATG
NONE
OsAffx.32294.1.S1_at--344--3211Chr11:3215132..3215153 (22 bp)
CAATGGAAAAACTCCTGTTCGTTGT
NONE
OsAffx.32294.1.S1_at--338--3811NONE
CTCCTGTTCGTTGTAAGATCACTGA
NONE
OsAffx.32294.1.S1_at--1120--1171Chr11:4187169..4187670 (25 bp)
AGTTTGCTTTTACACGGAGACGAAG
LOC_Os11g08050
OsAffx.32294.1.S1_at--1092--5971NONE
GAGACGAAGACCCTATCAAACAAAT
NONE
Target Sequence 
TGTTGATGCTTTCCTGTTTAGAATAAAGAAGAACAGAGAAAGTCTGATGAGCAGGAAAATTTGGTCACGTAGATCTTCTA
TTTCGCCGGAATTCGTTGATTGCTCCGTACTCATTTACAATGGAAAAACTCCTGTTCGTTGTAAGATCACTGAAGGAAAG
GTTGGTCATAAATTTGGAGAGTTTGCTTTTACACGGAGACGAAGACCCTATCAAACAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32294.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis