Browse Element(s) Details


OsAffx.18740.1.S1_at

Description tigr:9639.m00746
TID=OsAffx.18740.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0805011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08000NANA11+4155148..4157123hypothetical protein
LOC_Os11g08009NANA11+4158502..4158585NA
LOC_Os11g08020OsAffx.30872.1.S1_s_at11/1111+4164096..4171065ankyrin repeat family protein, putative, expressed
LOC_Os11g08029NANA11+4174430..4175580NA
LOC_Os11g08040OsAffx.18739.1.S1_at11/1111+4178511..4179702hypothetical protein
LOC_Os11g08050OsAffx.18740.1.S1_at11/1111+4180094..4187936hypothetical protein
LOC_Os11g08050Os.34854.1.S1_at10/1111+4180094..4187936hypothetical protein
LOC_Os11g08050OsAffx.32294.1.S1_at1/1111+4180094..4187936hypothetical protein
LOC_Os11g08060Os.33601.3.S1_x_at2/1111+4203932..4206883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08060OsAffx.20631.1.S1_x_at2/1111+4203932..4206883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08060Os.49936.2.A1_at1/1111+4203932..4206883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08070OsAffx.30873.1.S1_at11/1111+4208071..4209931hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18740.1.S1_at--760--9691Chr11:4180644..4180668 (25 bp)
TAAGGAAGACGTCCAACAGCCTCGC
LOC_Os11g08050
OsAffx.18740.1.S1_at--48--3651Chr11:4180476..4180500 (25 bp)
CTTCCGTTGTCGCAGTGATACTTAT
LOC_Os11g08050
OsAffx.18740.1.S1_at--880--4971Chr11:4180438..4180462 (25 bp)
GCATCTGGTTCATGGAAGAGCTTCA
LOC_Os11g08050
OsAffx.18740.1.S1_at--931--10451Chr11:4180411..4180435 (25 bp)
TTAGCTCTGCACTTCATGTGGGTTT
LOC_Os11g08050
OsAffx.18740.1.S1_at--1144--471Chr11:4180381..4180405 (25 bp)
ATCGGCATGATCGTGGCTTTCTGGG
LOC_Os11g08050
OsAffx.18740.1.S1_at--567--7131Chr11:4180282..4180306 (25 bp)
GTCTTGGTCTTGAGCATCATGATCT
LOC_Os11g08050
OsAffx.18740.1.S1_at--809--411Chr11:4180267..4180291 (25 bp)
ATCATGATCTTGACTAAGCCGGCGT
LOC_Os11g08050
OsAffx.18740.1.S1_at--829--1351Chr11:4180197..4180221 (25 bp)
AGAGACATCACAGGCGTGTCGCTCG
LOC_Os11g08050
OsAffx.18740.1.S1_at--707--5111Chr11:4180155..4180179 (25 bp)
GCACTTACTCGCGTAACTATTCTGT
LOC_Os11g08050
OsAffx.18740.1.S1_at--237--2531Chr11:4180141..4180165 (25 bp)
AACTATTCTGTCTTCGTTGTCACAA
LOC_Os11g08050
OsAffx.18740.1.S1_at--52--6631Chr11:4180126..4180150 (25 bp)
GTTGTCACAAACATCTTGGCATACG
LOC_Os11g08050
Target Sequence 
TAAGGAAGACGTCCAACAGCCTCGCTGTCGTGGCCGTGCTCGTCGCCACCGTCGCCTTCTCCGCCACGTTCAACGTGCCC
GGGGGCTACGGGGACGATGGCAAGGCGGTCCTCCAGGCGAAGACCGCCTACAAATTCTTCATCGTCTTCGACAGCGTCGC
CATGACGACTTCCGTTGTCGCAGTGATACTTATTGTGTATGGGAAAGCATCTGGTTCATGGAAGAGCTTCATTTTAGCTC
TGCACTTCATGTGGGTTTCGATGATCGGCATGATCGTGGCTTTCTGGGCGGCTCTGGTCGCCGTCATGAGAAGGAGGACA
ATCAATATTGTGATATACGAAGTCATAATCAATGGGATCTATGTCTTGGTCTTGAGCATCATGATCTTGACTAAGCCGGC
GTCGTGGATCAGCTTCGTGAAGTTTATGTTCAGCAGTTTATTGCCTGAGAGACATCACAGGCGTGTCGCTCGGCAGTATC
CGTTTGCCGGCACTTACTCGCGTAACTATTCTGTCTTCGTTGTCACAAACATCTTGGCATACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18740.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis