Browse Element(s) Details


OsAffx.18054.1.S1_at

Description tigr:9637.m03319
TID=OsAffx.18054.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3893011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38890OsAffx.6522.1.S1_at11/119+22331328..22333002hypothetical protein
LOC_Os09g38890Os.49759.1.S1_x_at1/119+22331328..22333002hypothetical protein
LOC_Os09g38900Os.48092.1.A1_at11/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38900Os.35344.18.S1_x_at10/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38900Os.35344.3.S1_x_at9/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38900OsAffx.22940.5.S1_x_at3/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38900OsAffx.22940.5.S1_at2/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38910Os.54238.1.S1_at11/119+22348258..22350996wall-associated kinase-like 1, putative, expressed
LOC_Os09g38920Os.20853.1.S1_at11/119+22351167..22353066Papain family cysteine protease containing protein, expressed
LOC_Os09g38920OsAffx.22518.1.S1_x_at1/119+22351167..22353066Papain family cysteine protease containing protein, expressed
LOC_Os09g38930OsAffx.18054.1.S1_at11/119+22354475..22356685expressed protein
LOC_Os09g38940OsAffx.18924.2.S1_x_at7/119+22358487..22360363hypothetical protein
LOC_Os09g38940OsAffx.19842.1.S1_at3/119+22358487..22360363hypothetical protein
LOC_Os09g38940OsAffx.18924.3.S1_at1/119+22358487..22360363hypothetical protein
LOC_Os09g38940OsAffx.19421.1.S1_at1/119+22358487..22360363hypothetical protein
LOC_Os09g38950Os.52564.1.S1_at6/119+22361130..22366210retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g38950Os.14444.1.S1_at1/119+22361130..22366210retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g38960Os.26972.1.S1_at11/119+22367307..22373131Potassium transporter 11, putative, expressed
LOC_Os09g38960OsAffx.18389.1.S1_at1/119+22367307..22373131Potassium transporter 11, putative, expressed
LOC_Os09g38970Os.18044.1.S1_s_at11/119+22376424..22381905DHHC zinc finger domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18054.1.S1_at--633--1531Chr09:22354933..22354957 (25 bp)
AGCAGGCAGCATCTCTTCGCCGAGG
LOC_Os09g38930
OsAffx.18054.1.S1_at--612--651Chr09:22354906..22354930 (25 bp)
ATGCAGCAAGTCGAGGCCATCCTCA
LOC_Os09g38930
OsAffx.18054.1.S1_at--243--8631Chr09:22354827..22354851 (25 bp)
TGGTGGACACCATCTTTATGAGAAG
LOC_Os09g38930
OsAffx.18054.1.S1_at--909--671Chr09:22354810..22354834 (25 bp)
ATGAGAAGTACTTCGGGCCCAGGTC
LOC_Os09g38930
OsAffx.18054.1.S1_at--385--1031Chr09:22354790..22354814 (25 bp)
AGGTCCCAATGAGTATCCTCTCGTC
LOC_Os09g38930
OsAffx.18054.1.S1_at--144--671Chr09:22354764..22354788 (25 bp)
ATGAAGCTTGCAGGCTCACGCAGGA
LOC_Os09g38930
OsAffx.18054.1.S1_at--466--971Chr09:22354743..22354767 (25 bp)
AGGAGCTGCTGCTACTCGACGACGA
LOC_Os09g38930
OsAffx.18054.1.S1_at--120--1391Chr09:22354719..22354743 (25 bp)
AGACGCGGTGTGAGCTCATGTACCA
LOC_Os09g38930
OsAffx.18054.1.S1_at--596--9971Chr09:22354699..22354723 (25 bp)
TACCATGTCTGGGTTGGGATGCTCT
LOC_Os09g38930
OsAffx.18054.1.S1_at--206--7631Chr09:22354576..22354600 (25 bp)
GGGACCAAGACCTTGTCCGACAAGC
LOC_Os09g38930
OsAffx.18054.1.S1_at--229--2451Chr09:22354518..22354542 (25 bp)
AACAACACGCACAGGGTAGCCAACA
LOC_Os09g38930
Target Sequence 
AGCAGGCAGCATCTCTTCGCCGAGGCCATGCAGCAAGTCGAGGCCATCCTCAAGCTGCGGGCCGGGCGTCACTTCAAGCG
CCCCTCCATCCAAGATGACATGGCCATGGTGGACACCATCTTTATGAGAAGTACTTCGGGCCCAGGTCCCAATGAGTATC
CTCTCGTCCATGAAGCTTGCAGGCTCACGCAGGAGCTGCTGCTACTCGACGACGAGACGCGGTGTGAGCTCATGTACCAT
GTCTGGGTTGGGATGCTCTTCTACTCCGCCGCCATGTGCAGGGGCTACCTCCACGCCAAGAGCTTGGGTGAAGGCGGCGA
GTTCCTCTCCTTCGTCTGGCTTCTCCTCTCCATCAAGGGGACCAAGACCTTGTCCGACAAGCTCCAGATGCCCGATCAAC
CTAACGCTCCTGTCCAACAACACGCACAGGGTAGCCAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18054.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis