Browse Element(s) Details


Os.53664.1.S1_s_at

Description gb:AK073825.1
DB_XREF= gi:32983848
TID=Os.53664.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53664 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033068E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033068E01, full insert sequence.
FL= gb:AK073825.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3871011/11HEAT repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38640OsAffx.6519.1.S1_at11/119+22222559..22224335IBR domain containing protein, expressed
LOC_Os09g38640OsAffx.2477.1.S1_x_at1/119+22222559..22224335IBR domain containing protein, expressed
LOC_Os09g38650Os.56200.1.S1_at11/119+22224746..22226350expressed protein
LOC_Os09g38660Os.51230.1.S1_at11/119+22229812..22232304expressed protein
LOC_Os09g38670OsAffx.30192.1.S1_at11/119+22234565..22235488Thioredoxin family protein, expressed
LOC_Os09g38670OsAffx.30192.1.S1_s_at11/119+22234565..22235488Thioredoxin family protein, expressed
LOC_Os09g38670Os.47888.1.S1_at11/119+22234565..22235488Thioredoxin family protein, expressed
LOC_Os09g38680OsAffx.18048.1.S1_at11/119+22237146..22237945hypothetical protein
LOC_Os09g38690Os.11336.1.S1_at11/119+22238962..22243005major facilitator superfamily protein, expressed
LOC_Os09g38700Os.23291.1.A1_at4/119+22243503..22248101strubbelig receptor family 5, putative, expressed
LOC_Os09g38710Os.53664.1.S1_s_at11/119+22248485..22253736HEAT repeat family protein, expressed
LOC_Os09g38710Os.53664.1.S1_at11/119+22248485..22253736HEAT repeat family protein, expressed
LOC_Os09g38720OsAffx.30193.1.S1_at11/119+22255566..22259443mTERF family protein, expressed
LOC_Os09g38720Os.46646.1.S1_x_at4/119+22255566..22259443mTERF family protein, expressed
LOC_Os09g38730Os.54799.1.A1_at5/119+22260127..2226147326S proteasome subunit P45 family protein
LOC_Os09g38740Os.7778.1.S1_at1/119+22263409..22263832hypothetical protein
LOC_Os09g38750OsAffx.18049.1.S1_at11/119+22265170..22268354expressed protein
LOC_Os09g38759Os.14296.1.S1_at10/119+22272465..22274489Dihydroneopterin aldolase, putative, expressed
LOC_Os09g38768Os.25141.1.S1_at11/119+22274793..22277382LEM3 family/CDC50 family protein, expressed
LOC_Os09g38768OsAffx.6520.1.S1_at11/119+22274793..22277382LEM3 family/CDC50 family protein, expressed
LOC_Os09g38768OsAffx.6520.1.S1_x_at11/119+22274793..22277382LEM3 family/CDC50 family protein, expressed
LOC_Os09g38777Os.9868.1.S1_at11/119+22277811..22283715molybdenum cofactor sulfurase family protein, putative, expressed
LOC_Os09g38777Os.10545.1.S1_at11/119+22277811..22283715molybdenum cofactor sulfurase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009826biological_processunidimensional cell growth
GO:0010031biological_processcircumnutation
GO:0010005cellular_componentcortical microtubule (sensu Viridiplantae)
GO:0008017molecular_functionmicrotubule binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53664.1.S1_s_at--182--4391Chr09:22249030..22249054 (25 bp)
CCAAGTCAACTTTTTGTGTCTGTGA
LOC_Os09g38710
Os.53664.1.S1_s_at--118--2911Chr09:22248997..22249021 (25 bp)
AAGGAGTTCCTTGCTTTATTGGAGG
LOC_Os09g38710
Os.53664.1.S1_s_at--37--5211Chr09:22248936..22248960 (25 bp)
GAATTGCCATTGCACAGCTTGCATT
LOC_Os09g38710
Os.53664.1.S1_s_at--653--8971Chr09:22248762..22248786 (25 bp)
TGAAACTATCATGGCCACTGCGATG
LOC_Os09g38710
Os.53664.1.S1_s_at--892--4611Chr09:22248743..22248767 (25 bp)
GCGATGTGAAATACTTCCCCTAGCA
LOC_Os09g38710
Os.53664.1.S1_s_at--306--5591Chr09:22248736..22248760 (25 bp)
GAAATACTTCCCCTAGCAATGTACC
LOC_Os09g38710
Os.53664.1.S1_s_at--415--4191Chr09:22248712..22248736 (25 bp)
CCCCTAGTGTATGTTCAAACTTCAA
LOC_Os09g38710
Os.53664.1.S1_s_at--636--2391Chr09:22248696..22248720 (25 bp)
AAACTTCAATGTCATGCTGCAGTGA
LOC_Os09g38710
Os.53664.1.S1_s_at--674--7391Chr09:22248675..22248699 (25 bp)
GTGATTGAGTGCACCCATTTCATTT
LOC_Os09g38710
Os.53664.1.S1_s_at--1001--3051Chr09:22248636..22248660 (25 bp)
AATCTGTGTGACAATGTATACTCGG
LOC_Os09g38710
Os.53664.1.S1_s_at--1029--8891Chr09:22248586..22248610 (25 bp)
TGAGTTCTGCAAATTCATCTATAGT
LOC_Os09g38710
Target Sequence 
CCAAGTCAACTTTTTGTGTCTGTGAGAGCACANAAGGAGTTCCTTGCTTTATTGGAGGAAGCTGCAACAAGTGGATCTAC
AGAGCCNGCAATCAGAATTGCCATTGCACAGCTTGCATTTAAACTGACAAAAGTNTGTGAGGNTGCACCATGCAGGAAAG
TTTTGAGTAGAGTGTGCAGAGGAAATGAAACTATCATGGCCACTGCGATGTGAAATACTTCCCCTAGCAATGTACCCCCT
AGTGTATGTTCAAACTTCAATGTCATGCTGCAGTGATTGAGTGCACCCATTTCATTTTGNTGTAGCNNNCCTGTAATCTG
TGTGACAATGTATACTCGGNTTGGGTACTATGTGCAAGACTAGATGAGTTCTGCAAATTCATCTATAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53664.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis