Browse Element(s) Details


OsAffx.8398.1.S1_at

Description gb:NM_195274.1
DB_XREF= gi:37531907
TID=OsAffx.8398.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative transposase (OSJNBb0038H12.11), mRNA.
PROD=putative transposase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1125011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g170309/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g321207/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g11200Os.32642.1.S1_at11/1110+5974227..5979386aminotransferase, classes I and II family protein, expressed
LOC_Os10g11200Os.54125.1.S1_at1/1110+5974227..5979386aminotransferase, classes I and II family protein, expressed
LOC_Os10g11210NANA10+5983580..5986912transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11220Os.46053.2.S1_x_at11/1110+5988115..5991347transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11230Os.47463.1.S1_x_at5/1110+5993282..5996982transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11230Os.14491.2.S1_x_at4/1110+5993282..5996982transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11240OsAffx.20647.1.S1_at11/1110+5998784..6001847hypothetical protein
LOC_Os10g11250OsAffx.8398.1.S1_at11/1110+6002618..6007189transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11260Os.14656.2.S1_at11/1110+6009693..6015999Ubiquitin-conjugating enzyme E2 M, putative, expressed
LOC_Os10g11260Os.14656.2.S1_x_at11/1110+6009693..6015999Ubiquitin-conjugating enzyme E2 M, putative, expressed
LOC_Os10g11260Os.14656.1.S1_at11/1110+6009693..6015999Ubiquitin-conjugating enzyme E2 M, putative, expressed
LOC_Os10g11270Os.46538.1.S1_at11/1110+6017219..6019621Sulfotransferase domain containing protein, expressed
LOC_Os10g11270Os.38273.1.S1_at1/1110+6017219..6019621Sulfotransferase domain containing protein, expressed
LOC_Os10g11280OsAffx.8397.1.S1_at11/1110+6023789..6028093retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g11290NANA10+6030061..6031547retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8398.1.S1_at--563--9811Chr10:6004088..6004112 (25 bp)
TAACGTCCCAATCATTCTGTGCAAG
LOC_Os10g11250
OsAffx.8398.1.S1_at--920--10773Chr12:19342410..19342434 (25 bp)
TTGATGTGATGCTACACCTGGCTGT
LOC_Os12g32120
OsAffx.8398.1.S1_at--236--4272Chr10:6004019..6004043 (25 bp)
CCTGGCTGTCCATTTACCTGAAGAG
LOC_Os10g11250
OsAffx.8398.1.S1_at--299--5192Chr12:19342369..19342393 (25 bp)
GCAATTCTTAGAGGTCCAGTACAAT
LOC_Os12g32120
OsAffx.8398.1.S1_at--11--10753Chr12:19342275..19342298 (24 bp)
TTGAAGGGTCCATTGCAGAAGCATA
LOC_Os12g32120
OsAffx.8398.1.S1_at--1130--6673Chr12:19342249..19342273 (25 bp)
GTTGCTGCTGAGTGTTTGACTATTT
LOC_Os12g32120
OsAffx.8398.1.S1_at--1002--5693Chr12:19342232..19342256 (25 bp)
GACTATTTGCTCGAAGTACTTTGGT
LOC_Os12g32120
OsAffx.8398.1.S1_at--1013--833Chr12:19342122..19342146 (25 bp)
ATGGAGTTGATCTTCTTGGAGCACC
LOC_Os12g32120
OsAffx.8398.1.S1_at--104--8553Chr12:19342106..19342130 (25 bp)
TGGAGCACCAAGTCTTACATATCTT
LOC_Os12g32120
OsAffx.8398.1.S1_at--43--7912Chr10:6003681..6003705 (25 bp)
GGTTCGTGCTAAACAATTGTCTGGA
LOC_Os10g11250
OsAffx.8398.1.S1_at--595--8732Chr10:6003635..6003659 (25 bp)
TGTCATCGCATCTACTATTTTCATT
LOC_Os10g11250
Target Sequence 
TAACGTCCCAATCATTCTGTGCAAGCTTGAGAAAATATTTCCTCCTTCTTTCTTTGATGTGATGCTACACCTGGCTGTCC
ATTTACCTGAAGAGGCAATTCTTAGAGGTCCAGTACAATATGGATGGATGTACCCAATAGAAAGAAGGTTATTAACATTG
AAACGGTTTGTGAGGAACATGGCAAGGCTTGAAGGGTCCATTGCAGAAGCATATGTTGCTGCTGAGTGTTTGACTATTTG
CTCGAAGTACTTTGGTGATGATGTTGAGACACGACACAATCGGGAGGGCAGAAATAGAGAGCGTGTTGCTATTGTGAAAA
AAGACCTATCTGTTTTCCAGCATGGAGTTGATCTTCTTGGAGCACCAAGTCTTACATATCTTGAACATGATTATGAAAAA
ATGGTTTGGTTCGTGCTAAACAATTGTCTGGAGGTTGAGCCATATATTGAGTATGTCATCGCATCTACTATTTTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8398.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis