Browse Element(s) Details


OsAffx.20647.1.S1_at

Description tigr:9638.m01002
TID=OsAffx.20647.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1124011/11hypothetical protein
LOC_Os08g1702011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g11200Os.32642.1.S1_at11/1110+5974227..5979386aminotransferase, classes I and II family protein, expressed
LOC_Os10g11200Os.54125.1.S1_at1/1110+5974227..5979386aminotransferase, classes I and II family protein, expressed
LOC_Os10g11210NANA10+5983580..5986912transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11220Os.46053.2.S1_x_at11/1110+5988115..5991347transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11230Os.47463.1.S1_x_at5/1110+5993282..5996982transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11230Os.14491.2.S1_x_at4/1110+5993282..5996982transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11240OsAffx.20647.1.S1_at11/1110+5998784..6001847hypothetical protein
LOC_Os10g11250OsAffx.8398.1.S1_at11/1110+6002618..6007189transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11260Os.14656.2.S1_at11/1110+6009693..6015999Ubiquitin-conjugating enzyme E2 M, putative, expressed
LOC_Os10g11260Os.14656.2.S1_x_at11/1110+6009693..6015999Ubiquitin-conjugating enzyme E2 M, putative, expressed
LOC_Os10g11260Os.14656.1.S1_at11/1110+6009693..6015999Ubiquitin-conjugating enzyme E2 M, putative, expressed
LOC_Os10g11270Os.46538.1.S1_at11/1110+6017219..6019621Sulfotransferase domain containing protein, expressed
LOC_Os10g11270Os.38273.1.S1_at1/1110+6017219..6019621Sulfotransferase domain containing protein, expressed
LOC_Os10g11280OsAffx.8397.1.S1_at11/1110+6023789..6028093retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20647.1.S1_at--677--6472Chr10:6000108..6000132 (25 bp)
GATAGCCGTGAGTTAGTTCAATACC
LOC_Os10g11240
OsAffx.20647.1.S1_at--1125--6752Chr10:6000093..6000117 (25 bp)
GTTCAATACCACCAGATGACAGGAT
LOC_Os10g11240
OsAffx.20647.1.S1_at--71--7972Chr10:6000072..6000096 (25 bp)
GGATCTCGGAGCTATGTTGCACAAT
LOC_Os10g11240
OsAffx.20647.1.S1_at--138--6272Chr10:5999477..5999501 (25 bp)
GATGTGCCACCAACTGCGATTGATA
LOC_Os10g11240
OsAffx.20647.1.S1_at--47--10212Chr10:5999454..5999478 (25 bp)
TATTTTCAAGGACACCCACTGCAGT
LOC_Os10g11240
OsAffx.20647.1.S1_at--381--5452Chr10:5999144..5999433 (25 bp)
GAACGCAAAGGATGCCATTGCTCAA
LOC_Os10g11240
OsAffx.20647.1.S1_at--894--832Chr10:5999140..5999164 (25 bp)
ATGGAGGCCTATGTTGCTCAACCAA
LOC_Os10g11240
OsAffx.20647.1.S1_at--961--2752Chr10:5999095..5999119 (25 bp)
AAGACTCCTGTTGAAGCTGTAGCTC
LOC_Os10g11240
OsAffx.20647.1.S1_at--941--4732Chr10:5999080..5999104 (25 bp)
GCTGTAGCTCATGTTCTGCCAAAAT
LOC_Os10g11240
OsAffx.20647.1.S1_at--188--2532Chr10:5999054..5999078 (25 bp)
AACTTTTCTTCGCAATGTTGGCATG
LOC_Os10g11240
OsAffx.20647.1.S1_at--932--5172Chr10:5999043..5999067 (25 bp)
GCAATGTTGGCATGCAGTCCACAGA
LOC_Os10g11240
Target Sequence 
GATAGCCGTGAGTTAGTTCAATACCACCAGATGACAGGATCTCGGAGCTATGTTGCACAATGCTATGTCATGNNNCAAAC
CAAATTTAAGGATGTGCCACCAACTGCGATTGATATTTTCAAGGACACCCACTGCAGTAGCAAGTCAGGTTTTAATGAGA
ACGCAAAGGATGCCATTGCTCAAATGGAGGCCTATGTTGCTCAACCAACAGAAGAAGGCAAAGATCCAAAGACTCCTGTT
GAAGCTGTAGCTCATGTTCTGCCAAAATCAACTTTTCTTCGCAATGTTGGCATGCAGTCCACAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20647.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis