Browse Element(s) Details


Os.32642.1.S1_at

Description gb:AK100991.1
DB_XREF= gi:32986200
TID=Os.32642.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.32642 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative serine palmitoyltransferase (OSJNBa0079H13.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023146D11, full insert sequence.
FL= gb:AK100991.1 gb:AK103411.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1120011/11aminotransferase, classes I and II family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g11170OsAffx.18215.1.S1_at10/1110+5952620..5953822hypothetical protein
LOC_Os10g11180Os.32672.1.S1_x_at1/1110+5960127..5963265hypothetical protein
LOC_Os10g11180OsAffx.2494.1.S1_at1/1110+5960127..5963265hypothetical protein
LOC_Os10g11180OsAffx.12184.1.S1_x_at1/1110+5960127..5963265hypothetical protein
LOC_Os10g11190OsAffx.22699.1.S1_x_at1/1110+5964097..5970694retrotransposon protein, putative, unclassified
LOC_Os10g11190OsAffx.18275.1.S1_x_at1/1110+5964097..5970694retrotransposon protein, putative, unclassified
LOC_Os10g11200Os.32642.1.S1_at11/1110+5974227..5979386aminotransferase, classes I and II family protein, expressed
LOC_Os10g11200Os.54125.1.S1_at1/1110+5974227..5979386aminotransferase, classes I and II family protein, expressed
LOC_Os10g11210NANA10+5983580..5986912transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11220Os.46053.2.S1_x_at11/1110+5988115..5991347transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11230Os.47463.1.S1_x_at5/1110+5993282..5996982transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11230Os.14491.2.S1_x_at4/1110+5993282..5996982transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11240OsAffx.20647.1.S1_at11/1110+5998784..6001847hypothetical protein
LOC_Os10g11250OsAffx.8398.1.S1_at11/1110+6002618..6007189transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0030148biological_processsphingolipid biosynthesis
GO:0046512biological_processsphingosine biosynthesis
GO:0005783cellular_componentendoplasmic reticulum
GO:0016020cellular_componentmembrane
GO:0004758molecular_functionserine C-palmitoyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32642.1.S1_at--698--5831Chr10:5974810..5974834 (25 bp)
GACCTGGAACTCCTTGAGATTATTG
LOC_Os10g11200
Os.32642.1.S1_at--469--5471Chr10:5974804..5974828 (25 bp)
GAACTCCTTGAGATTATTGCAGAGA
LOC_Os10g11200
Os.32642.1.S1_at--254--10231Chr10:5974703..5974814 (25 bp)
TATTGCAGAGAAGGTCTTGATGGAA
LOC_Os10g11200
Os.32642.1.S1_at--404--10551Chr10:5974669..5974693 (25 bp)
TTCATTGCAGCAACAAAGAGGTCGA
LOC_Os10g11200
Os.32642.1.S1_at--977--3391Chr10:5974662..5974686 (25 bp)
CAGCAACAAAGAGGTCGAGTTTGGA
LOC_Os10g11200
Os.32642.1.S1_at--1131--8351Chr10:5974633..5974657 (25 bp)
TGTCGGCTCCCGGTTGGAATCCGCT
LOC_Os10g11200
Os.32642.1.S1_at--648--4191Chr10:5974625..5974649 (25 bp)
CCCGGTTGGAATCCGCTTATTCGTG
LOC_Os10g11200
Os.32642.1.S1_at--685--3551Chr10:5974577..5974601 (25 bp)
CATCTTCAAAGTATCTGCATCCCTG
LOC_Os10g11200
Os.32642.1.S1_at--912--5051Chr10:5974543..5974567 (25 bp)
GCAGCATCAGTTGTCTAGTGAGTTT
LOC_Os10g11200
Os.32642.1.S1_at--235--3591Chr10:5974269..5974293 (25 bp)
CATTTTCTCTCCTCTGTCAAGAACT
LOC_Os10g11200
Os.32642.1.S1_at--1021--9511Chr10:5974264..5974288 (25 bp)
TCTCTCCTCTGTCAAGAACTCTTGA
LOC_Os10g11200
Target Sequence 
GACCTGGAACTCCTTGAGATTATTGCAGAGAAGGTCTTGATGGAAGATTCAGTCTTCATTGCAGCAACAAAGAGGTCGAG
TTTGGACAAGTGTCGGCTCCCGGTTGGAATCCGCTTATTCGTGTCAGCTGGTCACACTGAATCTGACATCTTCAAAGTAT
CTGCATCCCTGAAGAGGGTTGCAGCATCAGTTGTCTAGTGAGTTTNATACGGCTGNTTGAGNCGACNTGTTGNATNCTCA
GCTTNCTTNACATGNATNGTGTCCTNACATTTNAGGNTNACATAATTTNNGTNATGNTTNCATNCGNATNCTGGNCGCAN
ATNTNCATNTGNTNCATNATTNTNACCNNNAAGNAATNACNAATNNAAGATTTTNGTNAGCATNANGTNTTGNAATTNAA
GGATNCTGNATANGCTTNCGCTCTTGNTGNTANGTATANTGTGTGCATTGGCTGATNTTCTTCAACCGTCTAGCACTACT
ACATTGCTTACATAGTGATNTAGTTTTCTCATTTTCTCTCCTCTGTCAAGAACTCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32642.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis