Browse Element(s) Details


OsAffx.18215.1.S1_at

Description tigr:9638.m00994
TID=OsAffx.18215.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1117010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g11130OsAffx.18213.1.S1_at11/1110+5931182..5932093hypothetical protein
LOC_Os10g11140Os.5319.1.S1_at10/1110+5933194..5940682Phosphoglucomutase, chloroplast precursor, putative, expressed
LOC_Os10g11140Os.56122.1.S1_at1/1110+5933194..5940682Phosphoglucomutase, chloroplast precursor, putative, expressed
LOC_Os10g11150NANA10+5944987..5946426hypothetical protein
LOC_Os10g11160Os.40855.2.S1_x_at10/1110+5947867..5948829hypothetical protein
LOC_Os10g11160Os.40855.4.S1_x_at3/1110+5947867..5948829hypothetical protein
LOC_Os10g11160Os.40855.4.S1_at1/1110+5947867..5948829hypothetical protein
LOC_Os10g11160Os.40360.1.S1_x_at1/1110+5947867..5948829hypothetical protein
LOC_Os10g11170OsAffx.18215.1.S1_at10/1110+5952620..5953822hypothetical protein
LOC_Os10g11180Os.32672.1.S1_x_at1/1110+5960127..5963265hypothetical protein
LOC_Os10g11180OsAffx.2494.1.S1_at1/1110+5960127..5963265hypothetical protein
LOC_Os10g11180OsAffx.12184.1.S1_x_at1/1110+5960127..5963265hypothetical protein
LOC_Os10g11190OsAffx.22699.1.S1_x_at1/1110+5964097..5970694retrotransposon protein, putative, unclassified
LOC_Os10g11190OsAffx.18275.1.S1_x_at1/1110+5964097..5970694retrotransposon protein, putative, unclassified
LOC_Os10g11200Os.32642.1.S1_at11/1110+5974227..5979386aminotransferase, classes I and II family protein, expressed
LOC_Os10g11200Os.54125.1.S1_at1/1110+5974227..5979386aminotransferase, classes I and II family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18215.1.S1_at--65--2131Chr10:5953693..5953717 (25 bp)
ACACGAAAGATTTCCCTGGACGTCG
LOC_Os10g11170
OsAffx.18215.1.S1_at--148--1871Chr10:5953674..5953698 (25 bp)
ACGTCGGCCCTGGTAGATTTCAGGT
LOC_Os10g11170
OsAffx.18215.1.S1_at--491--11NONE
GTGGGCCGACCGTGTTGGTATAACA
NONE
OsAffx.18215.1.S1_at--217--2134Chr10:5952987..5953006 (20 bp)
ACAGGACTGCATGGGATAATCGATT
NONE
OsAffx.18215.1.S1_at--325--9391Chr10:5953024..5953048 (25 bp)
TCGATTATCATGTGCGCTCGGTATA
LOC_Os10g11170
OsAffx.18215.1.S1_at--719--9432Chr10:5953007..5953031 (25 bp)
TCGGTATAACTGGACCGCACGGGAT
LOC_Os10g11170
OsAffx.18215.1.S1_at--795--7931Chr10:5952979..5953002 (24 bp)
GGATTATCCCATGCAGTTGGGCCGC
LOC_Os10g11170
OsAffx.18215.1.S1_at--557--2254Chr07:16249807..16249826 (20 bp)
AAATATGGATTTTCGCAGACCCCTG
NONE
OsAffx.18215.1.S1_at--233--6231Chr10:5952826..5952850 (25 bp)
GATGGCACTAGTGGAGATCGTGATC
LOC_Os10g11170
OsAffx.18215.1.S1_at--184--1271Chr10:5952771..5952795 (25 bp)
AGATCAAGTTGAGAGAGGCGCCAGC
LOC_Os10g11170
OsAffx.18215.1.S1_at--1045--5631Chr10:5952686..5952710 (25 bp)
GACACCCGACGGAGGTCACTGTGGA
LOC_Os10g11170
Target Sequence 
ACACGAAAGATTTCCCTGGACGTCGGCCCTGGTAGATTTCAGGTGGGCCGACCGTGTTGGTATAACAGGACTGCATGGGA
TAATCGATTATCATGTGCGCTCGGTATAACTGGACCGCACGGGATAATGGATTATCCCATGCAGTTGGGCCGCCCGCACG
CGAAAATCCGAAAATATGGATTTTCGCAGACCCCTGGGTGCATGGGTGGAGTTGAGGATGGCACTAGTGGAGATCGTGAT
CGATGTAGGGAGGTGGCACATGCGGAGGGTAAGATCAAGTTGAGAGAGGCGCCAGCGGAGGATGCAGTTGAGCTAGGGAG
GTGGCATAGGCAGAGGCGCGAGGTCGAGTTGGGAGCGACACCCGACGGAGGTCACTGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18215.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis