Browse Element(s) Details


OsAffx.18213.1.S1_at

Description tigr:9638.m00991
TID=OsAffx.18213.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1113011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g11100Os.46874.1.S1_at11/1110+5904132..5909191retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g11100Os.46874.1.S1_x_at11/1110+5904132..5909191retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g11100Os.8976.1.S1_at4/1110+5904132..5909191retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g11100Os.38444.1.S1_x_at2/1110+5904132..5909191retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g11100Os.38444.2.S1_x_at1/1110+5904132..5909191retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g11110Os.18580.1.S1_at11/1110+5910667..5916587expressed protein
LOC_Os10g11110Os.27021.1.S1_x_at1/1110+5910667..5916587expressed protein
LOC_Os10g11110Os.53962.1.S1_at1/1110+5910667..5916587expressed protein
LOC_Os10g11120Os.38751.1.A1_at7/1110+5919334..5920860retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11120Os.49802.1.S2_at1/1110+5919334..5920860retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11130OsAffx.18213.1.S1_at11/1110+5931182..5932093hypothetical protein
LOC_Os10g11140Os.5319.1.S1_at10/1110+5933194..5940682Phosphoglucomutase, chloroplast precursor, putative, expressed
LOC_Os10g11140Os.56122.1.S1_at1/1110+5933194..5940682Phosphoglucomutase, chloroplast precursor, putative, expressed
LOC_Os10g11150NANA10+5944987..5946426hypothetical protein
LOC_Os10g11160Os.40855.2.S1_x_at10/1110+5947867..5948829hypothetical protein
LOC_Os10g11160Os.40855.4.S1_x_at3/1110+5947867..5948829hypothetical protein
LOC_Os10g11160Os.40855.4.S1_at1/1110+5947867..5948829hypothetical protein
LOC_Os10g11160Os.40360.1.S1_x_at1/1110+5947867..5948829hypothetical protein
LOC_Os10g11170OsAffx.18215.1.S1_at10/1110+5952620..5953822hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18213.1.S1_at--533--9531Chr10:5931493..5931517 (25 bp)
TCTACGTCGGAGTCCAGCGCTAGGA
LOC_Os10g11130
OsAffx.18213.1.S1_at--528--7131Chr10:5931574..5931598 (25 bp)
GTCATCGACGAGATGCCGCTTTGCC
LOC_Os10g11130
OsAffx.18213.1.S1_at--947--4211Chr10:5931589..5931613 (25 bp)
CCGCTTTGCCGTAGCCAACAAGAGG
LOC_Os10g11130
OsAffx.18213.1.S1_at--814--2791Chr10:5931608..5931632 (25 bp)
AAGAGGCGCCAAATCAGAGCTAGGA
LOC_Os10g11130
OsAffx.18213.1.S1_at--11--1371Chr10:5931623..5931647 (25 bp)
AGAGCTAGGAGGTCCTCGTCACCAA
LOC_Os10g11130
OsAffx.18213.1.S1_at--413--2611Chr10:5931673..5931697 (25 bp)
AACGCCATTGCGGTTGGCCGAGCAC
LOC_Os10g11130
OsAffx.18213.1.S1_at--1091--8351Chr10:5931796..5931820 (25 bp)
GGCGGAGAACTCTAGATCTGGCACT
LOC_Os10g11130
OsAffx.18213.1.S1_at--1156--1271Chr10:5931809..5931833 (25 bp)
AGATCTGGCACTAGGAGTCCTCCTT
LOC_Os10g11130
OsAffx.18213.1.S1_at--386--6031Chr10:5931939..5931963 (25 bp)
GAGATGAGCAGTACCGCCGATTGGT
LOC_Os10g11130
OsAffx.18213.1.S1_at--335--2891Chr10:5932000..5932024 (25 bp)
AAGGGAGTCGGCAGTCGCTGACTAT
LOC_Os10g11130
OsAffx.18213.1.S1_at--956--5891Chr10:5932039..5932063 (25 bp)
GAGCTGTAGCCGCTGTTGGCTCACT
LOC_Os10g11130
Target Sequence 
TCTACGTCGGAGTCCAGCGCTAGGACCTAAAAGGCAAAAGCGGCGGAGGGGGAAGGGAGAGTCCCTTGCCGCCCCTGCGA
CGTCATCGACGAGATGCCGCTTTGCCGTAGCCAACAAGAGGCGCCAAATCAGAGCTAGGAGGTCCTCGTCACCAACGTGG
GGAAGCACAGGGTGGCCACCAACGCCATTGCGGTTGGCCGAGCACGTCACTGCCGCCGGGGCACCATCCACTGCCACAGA
CCTTGTTGAGCCGAGCCGCCGCCAGAGAGAAGGTGAGAGGCATGGACCGGTGCTGCCAAGGTGGGCGGAGAACTCTAGAT
CTGGCACTAGGAGTCCTCCTTGTCGTCGTCACCTTCTTGCGTTGGGGTCCTCTGTCGCCATGCCCGCCGCCGAGGCCCGT
CTTCGGGTAGCCGCTGGCCAGCTGCCAGATCCGGTGGTCAAGGAAGGAGATGAGCAGTACCGCCGATTGGTGGAGGAGAC
GAAGAGTGCCGCCGGTCGAGAGAGAAGAAGGGAGTCGGCAGTCGCTGACTATGGAAGGAGAAGAGGGAGCTGTAGCCGCT
GTTGGCTCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18213.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis