Browse Element(s) Details

Os.18580.1.S1_at

Description

gb:AK070874.1
DB_XREF= gi:32980897
TID=Os.18580.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18580 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0079H13.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023074F23, full insert sequence.
FL= gb:AK070874.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os10g11110	11/11	expressed protein
LOC_Os08g01110	7/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os10g11070	OsAffx.20650.1.S1_at	11/11	10	+	5886114..5889044	retrotransposon protein, putative, unclassified
LOC_Os10g11070	Os.46012.2.S1_x_at	2/11	10	+	5886114..5889044	retrotransposon protein, putative, unclassified
LOC_Os10g11070	Os.46012.3.S1_x_at	2/11	10	+	5886114..5889044	retrotransposon protein, putative, unclassified
LOC_Os10g11070	Os.27088.1.A1_x_at	1/11	10	+	5886114..5889044	retrotransposon protein, putative, unclassified
LOC_Os10g11070	OsAffx.3521.1.S1_at	1/11	10	+	5886114..5889044	retrotransposon protein, putative, unclassified
LOC_Os10g11070	OsAffx.3521.1.S1_x_at	1/11	10	+	5886114..5889044	retrotransposon protein, putative, unclassified
LOC_Os10g11070	OsAffx.20650.2.S1_at	1/11	10	+	5886114..5889044	retrotransposon protein, putative, unclassified
LOC_Os10g11080	OsAffx.30387.1.S1_at	11/11	10	+	5892614..5894925	hypothetical protein
LOC_Os10g11080	Os.54408.1.S1_x_at	1/11	10	+	5892614..5894925	hypothetical protein
LOC_Os10g11080	Os.54408.1.S1_at	1/11	10	+	5892614..5894925	hypothetical protein
LOC_Os10g11090	Os.2235.3.S1_x_at	11/11	10	+	5900922..5902664	retrotransposon protein, putative, unclassified
LOC_Os10g11100	Os.46874.1.S1_at	11/11	10	+	5904132..5909191	retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g11100	Os.46874.1.S1_x_at	11/11	10	+	5904132..5909191	retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g11100	Os.8976.1.S1_at	4/11	10	+	5904132..5909191	retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g11100	Os.38444.1.S1_x_at	2/11	10	+	5904132..5909191	retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g11100	Os.38444.2.S1_x_at	1/11	10	+	5904132..5909191	retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g11110	Os.18580.1.S1_at	11/11	10	+	5910667..5916587	expressed protein
LOC_Os10g11110	Os.27021.1.S1_x_at	1/11	10	+	5910667..5916587	expressed protein
LOC_Os10g11110	Os.53962.1.S1_at	1/11	10	+	5910667..5916587	expressed protein
LOC_Os10g11120	Os.38751.1.A1_at	7/11	10	+	5919334..5920860	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11120	Os.49802.1.S2_at	1/11	10	+	5919334..5920860	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11130	OsAffx.18213.1.S1_at	11/11	10	+	5931182..5932093	hypothetical protein
LOC_Os10g11140	Os.5319.1.S1_at	10/11	10	+	5933194..5940682	Phosphoglucomutase, chloroplast precursor, putative, expressed
LOC_Os10g11140	Os.56122.1.S1_at	1/11	10	+	5933194..5940682	Phosphoglucomutase, chloroplast precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.18580.1.S1_at--291--11	2	Chr10:5915496..5915520 (25 bp)	ATTCTGATACCTTGGTTGGCTGGCT	LOC_Os10g11110
Os.18580.1.S1_at--256--835	2	Chr10:5915513..5915537 (25 bp)	GGCTGGCTCCTATATTTGTGACTAC	LOC_Os10g11110
Os.18580.1.S1_at--552--267	2	Chr10:5916222..5916246 (25 bp)	AAGCGCCTTCAGAGCCTGGTCTGAA	LOC_Os10g11110
Os.18580.1.S1_at--684--579	2	Chr10:5916280..5916304 (25 bp)	GACGCATGGCAGCAGTTTCAGCATT	LOC_Os10g11110
Os.18580.1.S1_at--1112--681	2	Chr10:5916294..5916318 (25 bp)	GTTTCAGCATTCTAATGGCGTTTGT	LOC_Os10g11110
Os.18580.1.S1_at--290--373	2	Chr10:5916323..5916347 (25 bp)	CTACTGATTGCCGTGTTGGTTGGAT	LOC_Os10g11110
Os.18580.1.S1_at--933--855	2	Chr10:5916343..5916367 (25 bp)	TGGATGCATATTCACATTGTCTGCC	LOC_Os10g11110
Os.18580.1.S1_at--965--771	1	Chr10:5916489..5916513 (25 bp)	GGGTGTTCTACAATTATCTATCTTG	LOC_Os10g11110
Os.18580.1.S1_at--758--43	2	Chr10:5916504..5916528 (25 bp)	ATCTATCTTGTGTGACAGCTGTGGG	LOC_Os10g11110
Os.18580.1.S1_at--376--301	1	Chr10:5916541..5916565 (25 bp)	AATGCCCATAACTAGCTATTAACAG	LOC_Os10g11110
Os.18580.1.S1_at--661--343	1	Chr10:5916563..5916587 (25 bp)	CAGTTGAAACCGTTGCATTTTTCGG	LOC_Os10g11110

Target Sequence

ATTCTGATACCTTGGTTGGCTGGCTCCTATATTTGTGACTACTTGCAACAATCAGAAACAANGGAGGATGCCATGGAGCG
CTGCAAGGAAGTGATGTCGCTTGAAGCAGATATGGGAAACTATTCNATCGTAGAACCAGAAAGTGCATCGGCTGCNACGC
TAGGATCGTTTTGGGATGTGGTNCCTGGAGCTTTGTCAAAAGCGCCTTCAGAGCCTGGTCTGAAAGAGATGAACTCTGGA
CAGAATGGNTCGAGGAAGACGCATGGCAGCAGTTTCAGCATTCTAATGGCGTTTGTAGTNCTACTGATTGCCGTGTTGGT
TGGATGCATATTCACATTGTCTGCCNCCTTGAAGACCTGATCATGTNAAATCGACCGANATGGCATATTTTCTGTTTTGT
CCAGAAAGAATTAACTCCTGGTGAATGATGAAGAANAATAGATCGCTAAAAATCTGATATTCTTGTGGGGTGTTCTACAA
TTATCTATCTTGTGTGACAGCTGTGGGTGAAATCTAATTAATGCCCATAACTAGCTATTAACAGTTGAAACCGTTGCATT
TTTCGG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis