Browse Element(s) Details


Os.38444.2.S1_x_at

Description gb:AU163271
DB_XREF= gi:11118083
DB_XREF=AU163271
CLONE=C60468
TID=Os.38444.2
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.38444 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g221501/11retrotransposon protein, putative, unclassified
LOC_Os10g111001/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g22070NANA11+12202174..12203162retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22080NANA11+12203948..12204719retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22090NANA11+12205444..12205995hypothetical protein
LOC_Os11g22100NANA11+12208393..12210960retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22110NANA11+12211526..12212017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22120NANA11+12212831..12213402hypothetical protein
LOC_Os11g22130OsAffx.12157.1.S1_at3/1111+12218278..12220466retrotransposon protein, putative, unclassified
LOC_Os11g22140NANA11+12222112..12223117retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22150OsAffx.11392.2.S1_x_at6/1111+12225916..12229194retrotransposon protein, putative, unclassified
LOC_Os11g22150OsAffx.11392.3.S1_at1/1111+12225916..12229194retrotransposon protein, putative, unclassified
LOC_Os11g22150Os.38444.1.S1_x_at1/1111+12225916..12229194retrotransposon protein, putative, unclassified
LOC_Os11g22150Os.38444.2.S1_x_at1/1111+12225916..12229194retrotransposon protein, putative, unclassified
LOC_Os11g22160OsAffx.30891.1.S1_x_at3/1111+12232980..12241164retrotransposon protein, putative, unclassified
LOC_Os11g22160OsAffx.29195.1.A1_at2/1111+12232980..12241164retrotransposon protein, putative, unclassified
LOC_Os11g22160OsAffx.24278.1.S1_x_at1/1111+12232980..12241164retrotransposon protein, putative, unclassified
LOC_Os11g22170OsAffx.13772.1.S1_at1/1111+12242128..12243218hypothetical protein
LOC_Os11g22170Os.27520.8.S1_x_at1/1111+12242128..12243218hypothetical protein
LOC_Os11g22180NANA11+12246311..12247597hypothetical protein
LOC_Os11g22190Os.14919.1.S1_at3/1111+12252973..12257329SWIM zinc finger family protein
LOC_Os11g22190Os.56216.1.S1_at1/1111+12252973..12257329SWIM zinc finger family protein
LOC_Os11g22190OsAffx.29313.1.S1_at1/1111+12252973..12257329SWIM zinc finger family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38444.2.S1_x_at--892--9234Chr12:11293818..11293938 (25 bp)
TCCATTTGCTAGAAGGTGGCTGCAA
NONE
Os.38444.2.S1_x_at--10--10736Chr12:11293921..11293943 (23 bp)
TTGCTAGAAGGTGGCTGCAACTCAC
NONE
Os.38444.2.S1_x_at--68--10035Chr12:11293923..11293947 (25 bp)
TAGAAGGTGGCTGCAACTCACCCCG
NONE
Os.38444.2.S1_x_at--716--2895Chr12:11293926..11293950 (25 bp)
AAGGTGGCTGCAACTCACCCCGAGT
NONE
Os.38444.2.S1_x_at--615--7534Chr12:11293929..11293953 (25 bp)
GTGGCTGCAACTCACCCCGAGTTCA
NONE
Os.38444.2.S1_x_at--1013--10399Chr12:11702334..11702358 (25 bp)
TTTTGATTTCGGTTGAAGCAGCCCT
NONE
Os.38444.2.S1_x_at--249--10318Chr12:11702340..11702364 (25 bp)
TTTCGGTTGAAGCAGCCCTAGGCAA
NONE
Os.38444.2.S1_x_at--296--10097Chr12:11293982..11294006 (25 bp)
TAGGCAACGTCTCTTGCCGTCAGCC
NONE
Os.38444.2.S1_x_at--670--2777Chr12:11294008..11294032 (25 bp)
AAGACCTTGCTCCATCTCTTGCCAT
NONE
Os.38444.2.S1_x_at--390--2617Chr12:11702433..11702456 (24 bp)
AACCCTACGTCCAGGTTGCTGCCAT
NONE
Os.38444.2.S1_x_at--21--1917Chr12:11702438..11702461 (24 bp)
ACGTCCAGGTTGCTGCCATGTGAGT
NONE
Target Sequence 
TCCATTTGCTAGAAGGTGGCTGCAACTCACCCCGAGTTCANCTCTTTTGATTTCGGTTGAAGCAGCCCTAGGCAACGTCT
CTTGCCGTCAGCCCAAGACCTTGCTCCATCTCTTGCCATCAGCCCAAGGCCTTAGCCTCGCACAACCCTACGTCCAGGTT
GCTGCCATGTGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38444.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis