Browse Element(s) Details


OsAffx.29195.1.A1_at

Description tigr:9636.m01427
TID=OsAffx.29195.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g221602/11retrotransposon protein, putative, unclassified
LOC_Os02g221701/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g22100NANA11+12208393..12210960retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22110NANA11+12211526..12212017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22120NANA11+12212831..12213402hypothetical protein
LOC_Os11g22130OsAffx.12157.1.S1_at3/1111+12218278..12220466retrotransposon protein, putative, unclassified
LOC_Os11g22140NANA11+12222112..12223117retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22150OsAffx.11392.2.S1_x_at6/1111+12225916..12229194retrotransposon protein, putative, unclassified
LOC_Os11g22150OsAffx.11392.3.S1_at1/1111+12225916..12229194retrotransposon protein, putative, unclassified
LOC_Os11g22150Os.38444.1.S1_x_at1/1111+12225916..12229194retrotransposon protein, putative, unclassified
LOC_Os11g22150Os.38444.2.S1_x_at1/1111+12225916..12229194retrotransposon protein, putative, unclassified
LOC_Os11g22160OsAffx.30891.1.S1_x_at3/1111+12232980..12241164retrotransposon protein, putative, unclassified
LOC_Os11g22160OsAffx.29195.1.A1_at2/1111+12232980..12241164retrotransposon protein, putative, unclassified
LOC_Os11g22160OsAffx.24278.1.S1_x_at1/1111+12232980..12241164retrotransposon protein, putative, unclassified
LOC_Os11g22170OsAffx.13772.1.S1_at1/1111+12242128..12243218hypothetical protein
LOC_Os11g22170Os.27520.8.S1_x_at1/1111+12242128..12243218hypothetical protein
LOC_Os11g22180NANA11+12246311..12247597hypothetical protein
LOC_Os11g22190Os.14919.1.S1_at3/1111+12252973..12257329SWIM zinc finger family protein
LOC_Os11g22190Os.56216.1.S1_at1/1111+12252973..12257329SWIM zinc finger family protein
LOC_Os11g22190OsAffx.29313.1.S1_at1/1111+12252973..12257329SWIM zinc finger family protein
LOC_Os11g22200NANA11+12261450..12261998hypothetical protein
LOC_Os11g22210Os.23349.1.S1_x_at1/1111+12263854..12265972hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29195.1.A1_at--869--7433Chr11:12238744..12238768 (25 bp)
GGGAACCCTGGATCAAACGGAGCTG
LOC_Os11g22160
OsAffx.29195.1.A1_at--259--54515Chr11:12238746..12238769 (24 bp)
GAACCCTGGATCAAACGGAGCTGCT
LOC_Os11g22160
OsAffx.29195.1.A1_at--562--1815Chr02:16788478..16788499 (22 bp)
ACCCTGGATCAAACGGAGCTGCTGG
NONE
OsAffx.29195.1.A1_at--16--4876Chr07:10610853..10611348 (25 bp)
GCTAGCGGCCTCCTCTGTTGCTTCT
NONE
OsAffx.29195.1.A1_at--764--9478Chr07:10611337..10611361 (25 bp)
TCTGTTGCTTCTCTTCGCAGACTTG
NONE
OsAffx.29195.1.A1_at--505--6678Chr07:10611340..10611364 (25 bp)
GTTGCTTCTCTTCGCAGACTTGTGA
NONE
OsAffx.29195.1.A1_at--585--3131Chr08:8578429..8578453 (25 bp)
AATTTTGGCCCGATTCGTTGTGTCA
NONE
OsAffx.29195.1.A1_at--1145--10391Chr08:8578427..8578451 (25 bp)
TTTTGGCCCGATTCGTTGTGTCAAT
NONE
OsAffx.29195.1.A1_at--402--8471Chr08:8578424..8578448 (25 bp)
TGGCCCGATTCGTTGTGTCAATTCT
NONE
OsAffx.29195.1.A1_at--144--4531Chr08:8578422..8578446 (25 bp)
GCCCGATTCGTTGTGTCAATTCTGA
NONE
OsAffx.29195.1.A1_at--888--4231Chr08:8578420..8578444 (25 bp)
CCGATTCGTTGTGTCAATTCTGAGT
NONE
Target Sequence 
GGGAACCCTGGATCAAACGGAGCTGCTGGGGGTTCGGCCGAACCTGGGGCCGGCCCAATCCTGCCCAATTTCGGCTAGCG
GCCTCCTCTGTTGCTTCTCTTCGCAGACTTGTGAATTTTGGCCCGATTCGTTGTGTCAATTCTGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29195.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis