Browse Element(s) Details


OsAffx.12157.1.S1_at

Description tigr:9630.m02150
TID=OsAffx.12157.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2234011/11pol, putative
LOC_Os11g221303/11retrotransposon protein, putative, unclassified
LOC_Os07g258702/11retrotransposon protein, putative, unclassified
LOC_Os04g179802/11hypothetical protein
LOC_Os11g257201/11retrotransposon protein, putative, unclassified
LOC_Os05g226801/11retrotransposon protein, putative, unclassified
LOC_Os06g321801/11retrotransposon protein, putative, unclassified
LOC_Os06g319201/11retrotransposon protein, putative, unclassified
LOC_Os06g319501/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g22280OsAffx.24382.1.S1_x_at11/112+13304016..13315739expressed protein
LOC_Os02g22280Os.27910.1.S1_at2/112+13304016..13315739expressed protein
LOC_Os02g22290Os.54651.1.S1_at3/112+13318079..13323006retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g22290Os.24109.1.A1_at3/112+13318079..13323006retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g22290Os.52750.1.S1_x_at1/112+13318079..13323006retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g22290OsAffx.3902.1.S1_at1/112+13318079..13323006retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g22300NANA2+13323985..13324752retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22310NANA2+13328857..13329423retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22320NANA2+13330812..13331648retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22330OsAffx.24383.1.S1_at11/112+13332384..13333320hypothetical protein
LOC_Os02g22340OsAffx.12157.1.S1_at11/112+13334765..13335037pol, putative
LOC_Os02g22350OsAffx.24384.1.S1_at10/112+13337395..13340367hypothetical protein
LOC_Os02g22350Os.54531.1.S1_at1/112+13337395..13340367hypothetical protein
LOC_Os02g22360NANA2+13342290..13342925retrotransposon protein, putative, unclassified
LOC_Os02g22370Os.13476.1.S1_at9/112+13349861..13360553expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12157.1.S1_at--514--6337Chr04:9859548..9859572 (25 bp)
GATGCAGCTCTCTGAGCTGGAGGAA
LOC_Os04g17980
OsAffx.12157.1.S1_at--209--7635Chr04:9592242..9592266 (25 bp)
GGGACAAGGCCTATCACAATGCCAA
NONE
OsAffx.12157.1.S1_at--1161--3291Chr02:13334938..13334962 (25 bp)
CACAATGCCAAGATCTGTATGGACA
LOC_Os02g22340
OsAffx.12157.1.S1_at--729--81310Chr07:14856929..14856953 (25 bp)
GGACAGAACCAAAAGATGGCATGAT
LOC_Os07g25870
OsAffx.12157.1.S1_at--492--851Chr02:13334903..13334927 (25 bp)
ATGGCATGATAGACAGATCAAGCAC
LOC_Os02g22340
OsAffx.12157.1.S1_at--464--38310Chr07:14856996..14857020 (25 bp)
CTGCTGTTCAACTCACGGGTGAAGC
LOC_Os07g25870
OsAffx.12157.1.S1_at--520--2531Chr02:13334842..13334866 (25 bp)
AACTCACGGGTGAAGCTATTCGGAC
LOC_Os02g22340
OsAffx.12157.1.S1_at--797--1911Chr02:13334837..13334861 (25 bp)
ACGGGTGAAGCTATTCGGACATGGA
LOC_Os02g22340
OsAffx.12157.1.S1_at--606--5331Chr02:13334831..13334855 (25 bp)
GAAGCTATTCGGACATGGAAAACTT
LOC_Os02g22340
OsAffx.12157.1.S1_at--390--2971Chr02:13334799..13334823 (25 bp)
AATGGATGGGCCCATATATCGCCGT
LOC_Os02g22340
OsAffx.12157.1.S1_at--1063--6251Chr02:13334795..13334819 (25 bp)
GATGGGCCCATATATCGCCGTCGAC
LOC_Os02g22340
Target Sequence 
GATGCAGCTCTCTGAGCTGGAGGAATGGAGGGACAAGGCCTATCACAATGCCAAGATCTGTATGGACAGAACCAAAAGAT
GGCATGATAGACAGATCAAGCACAAGGAGTTCAAAGCAGGGGATAAGGTGCTGCTGTTCAACTCACGGGTGAAGCTATTC
GGACATGGAAAACTTCGAAATAAATGGATGGGCCCATATATCGCCGTCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12157.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis