Browse Element(s) Details


Os.54531.1.S1_at

Description gb:AK105534.1
DB_XREF= gi:32990743
TID=Os.54531.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54531 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-127-H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-127-H01, full insert sequence.
FL= gb:AK105534.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2946011/11hypothetical protein
LOC_Os02g223501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g29430Os.50296.1.S1_at11/116+16851006..16857767Cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed
LOC_Os06g29440Os.56255.1.S1_x_at2/116+16861023..16863324expressed protein
LOC_Os06g29440OsAffx.23361.2.S1_x_at1/116+16861023..16863324expressed protein
LOC_Os06g29450OsAffx.27863.1.S1_at11/116+16876332..16877693expressed protein
LOC_Os06g29460Os.54531.1.S1_at11/116+16878621..16880671hypothetical protein
LOC_Os06g29470Os.27789.1.A1_at2/116+16895518..16896664Peroxidase 1 precursor, putative, expressed
LOC_Os06g29480OsAffx.26961.1.S1_x_at1/116+16901951..16902985Transposable element protein, putative, Retrotrans_gag

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54531.1.S1_at--685--3311Chr06:16879117..16879141 (25 bp)
CACAGGTATGATGCGCCATGTTCTT
LOC_Os06g29460
Os.54531.1.S1_at--74--731Chr06:16879100..16879124 (25 bp)
ATGTTCTTGACCTGCGTAGCCTCAT
LOC_Os06g29460
Os.54531.1.S1_at--773--2631Chr06:16879070..16879094 (25 bp)
AACCAGGCTACTATTTCTGCTGCTA
LOC_Os06g29460
Os.54531.1.S1_at--875--6331Chr06:16879019..16879043 (25 bp)
GATGCTACTACTGATGATCTTGCTG
LOC_Os06g29460
Os.54531.1.S1_at--203--6431Chr06:16879004..16879028 (25 bp)
GATCTTGCTGTTGCCATTGCAGTAT
LOC_Os06g29460
Os.54531.1.S1_at--339--8071Chr06:16878978..16879002 (25 bp)
GGAGCTGTATACCACACTGTTCAAA
LOC_Os06g29460
Os.54531.1.S1_at--32--3731Chr06:16878931..16878955 (25 bp)
CTGCTCTTAAGCATCGTGGGTTAAT
LOC_Os06g29460
Os.54531.1.S1_at--748--7671Chr06:16878914..16878938 (25 bp)
GGGTTAATCTAATCCACGATCCATT
LOC_Os06g29460
Os.54531.1.S1_at--1155--2231Chr06:16878820..16878844 (25 bp)
AAATTCTTTTACAGGGCTATTGCTT
LOC_Os06g29460
Os.54531.1.S1_at--395--2472Chr06:16878788..16878812 (25 bp)
AACACTACACGCTATACTTTATTCA
LOC_Os06g29460
Os.54531.1.S1_at--1068--173Chr02:13337824..13337848 (25 bp)
ATTTAGTTCCCATTCATCCACATGA
LOC_Os02g22350
Target Sequence 
CACAGGTATGATGCGCCATGTTCTTGACCTGCGTAGCCTCATCCAGAAACCAGGCTACTATTTCTGCTGCTACTACTACT
ACTCCAGTAAGAGTAGACGATGCTACTACTGATGATCTTGCTGTTGCCATTGCAGTATAGGAGCTGTATACCACACTGTT
CAAATACTACGCAGCCTAGATTCTCCCTGCTCTTAAGCATCGTGGGTTAATCTAATCCACGATCCATTTTTATTTTTAGT
CCTGATAAAACCAACAAATATTATATGCCATTGCAGTATAAGTGGTTTTCTTTGACTAAATTCTTTTACAGGGCTATTGC
TTTATTTTTAACACTACACGCTATACTTTATTCACTTTCAATTTGATGACAGTGTCAAGAAATCCATTTAGTTCCCATTC
ATCCACATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54531.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis