Browse Element(s) Details


OsAffx.26961.1.S1_x_at

Description tigr:9633.m01901
TID=OsAffx.26961.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2083011/11hypothetical protein
LOC_Os04g034301/11hypothetical protein
LOC_Os10g096401/11hypothetical protein
LOC_Os12g176501/11hypothetical protein
LOC_Os06g294801/11Transposable element protein, putative, Retrotrans_gag
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g20800Os.24831.1.S1_x_at10/115+12186306..12189104retrotransposon protein, putative, unclassified
LOC_Os05g20800Os.24831.3.S1_x_at9/115+12186306..12189104retrotransposon protein, putative, unclassified
LOC_Os05g20800Os.24831.3.S1_s_at4/115+12186306..12189104retrotransposon protein, putative, unclassified
LOC_Os05g20800Os.53142.1.S1_at3/115+12186306..12189104retrotransposon protein, putative, unclassified
LOC_Os05g20800Os.24831.4.S1_x_at1/115+12186306..12189104retrotransposon protein, putative, unclassified
LOC_Os05g20800Os.23706.1.A1_x_at1/115+12186306..12189104retrotransposon protein, putative, unclassified
LOC_Os05g20810NANA5+12191521..12192583retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g20820OsAffx.20590.1.S1_at1/115+12197940..12200429retrotransposon protein, putative, unclassified
LOC_Os05g20830OsAffx.26961.1.S1_at11/115+12209921..12213415hypothetical protein
LOC_Os05g20830OsAffx.26961.1.S1_x_at11/115+12209921..12213415hypothetical protein
LOC_Os05g20830Os.39852.1.S1_at3/115+12209921..12213415hypothetical protein
LOC_Os05g20830Os.17546.2.S1_x_at1/115+12209921..12213415hypothetical protein
LOC_Os05g20840NANA5+12215424..12221006retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g20850NANA5+12222998..12225024retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g20860OsAffx.31083.1.S1_x_at3/115+12232719..12233815hypothetical protein
LOC_Os05g20870NANA5+12235620..12237066transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26961.1.S1_x_at--312--9431Chr05:12209987..12210011 (25 bp)
TCGGATCCTATTTTAACACCTAGCA
LOC_Os05g20830
OsAffx.26961.1.S1_x_at--859--7951Chr05:12209989..12210013 (25 bp)
GGATCCTATTTTAACACCTAGCAAC
LOC_Os05g20830
OsAffx.26961.1.S1_x_at--351--4431Chr05:12209992..12210016 (25 bp)
TCCTATTTTAACACCTAGCAACGAA
LOC_Os05g20830
OsAffx.26961.1.S1_x_at--1069--10451Chr05:12209999..12210023 (25 bp)
TTAACACCTAGCAACGAAATTCGTC
LOC_Os05g20830
OsAffx.26961.1.S1_x_at--250--1731Chr05:12210004..12210028 (25 bp)
ACCTAGCAACGAAATTCGTCCTGAA
LOC_Os05g20830
OsAffx.26961.1.S1_x_at--535--4093Chr12:10106330..10106353 (24 bp)
CGAAATTCGTCCTGAATTCATCAGT
LOC_Os12g17650
OsAffx.26961.1.S1_x_at--962--1251Chr05:12210048..12210072 (25 bp)
AGATATCTTTCTCTGGTTTAGGCCA
LOC_Os05g20830
OsAffx.26961.1.S1_x_at--780--1774Chr10:4981486..4981506 (21 bp)
ACCCGCGGGAATTCGAGCAGCTTTG
LOC_Os10g09640
OsAffx.26961.1.S1_x_at--602--6211Chr05:12210132..12210156 (25 bp)
GAGGCGTGAAGCAAGAGATTGTTCG
LOC_Os05g20830
OsAffx.26961.1.S1_x_at--323--8771Chr05:12210165..12210189 (25 bp)
TGTTTAAATTTTCTCTTCATGAGAA
LOC_Os05g20830
OsAffx.26961.1.S1_x_at--731--10591Chr05:12210257..12210281 (25 bp)
TTCTGCCTCACATTTTTCCCTGTAA
LOC_Os05g20830
Target Sequence 
TCGGATCCTATTTTAACACCTAGCAACGAAATTCGTCCTGAATTCATCAGTATGGTTAGGGAGATATCTTTCTCTGGTTT
AGGCCAGGAAAACCCCTACCATCACCCGCGGGAATTCGAGCAGCTTTGCTCGTGCCTTAAGATTCGAGGCGTGAAGCAAG
AGATTGTTCGGTGGAAATTGTTTAAATTTTCTCTTCATGAGAAAACGAAACAATGGTACACATCTACCGTCAAGTGTGTA
AACGGTGACTGGGAGAAATTGCGAGACAAGTTCTGCCTCACATTTTTCCCTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26961.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis