Browse Element(s) Details


Os.39852.1.S1_at

Description gb:NM_194954.1
DB_XREF= gi:37531267
TID=Os.39852.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.39852 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNAa0036D19.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNAa0036D19.7), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0711011/11hypothetical protein
LOC_Os03g333803/11hypothetical protein
LOC_Os05g208303/11hypothetical protein
LOC_Os04g071202/11Transposable element protein, putative, Retrotrans_gag
LOC_Os12g225302/11hypothetical protein
LOC_Os12g149841/11hypothetical protein
LOC_Os11g276701/11hypothetical protein
LOC_Os03g319801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g07060NANA10+3700566..3701397B3 DNA binding domain containing protein, expressed
LOC_Os10g07069NANA10+3708380..3709161NA
LOC_Os10g07080Os.46864.2.S1_x_at11/1110+3712113..3714512expressed protein
LOC_Os10g07080Os.46864.1.S1_at11/1110+3712113..3714512expressed protein
LOC_Os10g07090NANA10+3716556..3718800retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g07100NANA10+3719789..3720184hypothetical protein
LOC_Os10g07110Os.39852.1.S1_at11/1110+3722228..3723436hypothetical protein
LOC_Os10g07110OsAffx.13644.1.S1_at2/1110+3722228..3723436hypothetical protein
LOC_Os10g07120NANA10+3728354..3728674hypothetical protein
LOC_Os10g07130NANA10+3729738..3730297hypothetical protein
LOC_Os10g07139NANA10+3732952..3733307NA
LOC_Os10g07150OsAffx.30326.1.S1_x_at11/1110+3735725..3736491hypothetical protein
LOC_Os10g07160Os.50472.2.S1_x_at11/1110+3739255..3746752hypothetical protein
LOC_Os10g07160OsAffx.24330.1.S1_x_at10/1110+3739255..3746752hypothetical protein
LOC_Os10g07160OsAffx.24330.1.S1_at10/1110+3739255..3746752hypothetical protein
LOC_Os10g07160Os.24478.1.S1_at8/1110+3739255..3746752hypothetical protein
LOC_Os10g07160OsAffx.17844.1.S1_at7/1110+3739255..3746752hypothetical protein
LOC_Os10g07160Os.50472.2.S1_s_at1/1110+3739255..3746752hypothetical protein
LOC_Os10g07160Os.52323.1.S1_at1/1110+3739255..3746752hypothetical protein
LOC_Os10g07160OsAffx.20940.1.S1_at1/1110+3739255..3746752hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39852.1.S1_at--1054--3111Chr10:3722320..3722344 (25 bp)
AATTTGTTCCGAATTCATCAGTATG
LOC_Os10g07110
Os.39852.1.S1_at--27--10352Chr10:3722914..3722938 (25 bp)
TTTTGCCAAGACTGAACCCAAGCCT
LOC_Os10g07110
Os.39852.1.S1_at--651--2752Chr10:3722921..3722945 (25 bp)
AAGACTGAACCCAAGCCTTCAACAT
LOC_Os10g07110
Os.39852.1.S1_at--950--9691Chr10:3722939..3722963 (25 bp)
TCAACATCTTCGAGTCTGACTACAG
LOC_Os10g07110
Os.39852.1.S1_at--887--1151Chr10:3722951..3722975 (25 bp)
AGTCTGACTACAGAGTCCTCCATGA
LOC_Os10g07110
Os.39852.1.S1_at--859--8891Chr10:3723121..3723145 (25 bp)
TGAGTCCCCTGAGTCTACTCTAGAA
LOC_Os10g07110
Os.39852.1.S1_at--1037--7151Chr10:3723133..3723157 (25 bp)
GTCTACTCTAGAACATGATGATCTT
LOC_Os10g07110
Os.39852.1.S1_at--254--111Chr10:3723174..3723198 (25 bp)
ATTCTGGCGAGACCCTTGAGTTGCA
LOC_Os10g07110
Os.39852.1.S1_at--106--3934Chr12:12715417..12715441 (25 bp)
CTGGCCATCAAAATGTTGTTCTCGA
LOC_Os12g22530
Os.39852.1.S1_at--1116--2975Chr12:12715428..12715452 (25 bp)
AATGTTGTTCTCGACATTTGTCAAG
LOC_Os12g22530
Os.39852.1.S1_at--43--2477Chr10:3723286..3723310 (25 bp)
AACAACCTTGTTCTTGCACGATGCA
LOC_Os10g07110
Target Sequence 
AATTTGTTCCGAATTCATCAGTATGTGTGTTGAACCCCATCCAGAAGCATTTGTGTCAGGAAGGGAGGAACCTTCTTTTG
CCAAGACTGAACCCAAGCCTTCAACATCTTCGAGTCTGACTACAGAGTCCTCCATGAAGCCATCGCCGGATTCCAGAGAA
ATTCAAGCTCCGGGTTGCGCTCCTAAATTCAGGGATGGTCCTCATACCGATTATGTGAAAACCTTGATAGGCATCCTCCC
TGATAATACGCCAATAGAGGAAGTAATGGCGGTTCTGCTTCATGAGTCCCCTGAGTCTACTCTAGAACATGATGATCTTC
ATTTCATTCGAAAAGATTCTGGCGAGACCCTTGAGTTGCACTCCAAAGAACCACCATCACAACCTCCTATCGAGCGTGAA
CCTTGTCCCTCTGGCCATCAAAATGTTGTTCTCGACATTTGTCAAGAAACAACCTTGTTCTTGCACGATGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39852.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis