Browse Element(s) Details


OsAffx.24330.1.S1_x_at

Description gb:NM_194957.1
DB_XREF= gi:37531273
TID=OsAffx.24330.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative retroelement (OSJNAa0036D19.10), mRNA.
PROD=putative retroelement
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0716010/11hypothetical protein
LOC_Os06g257701/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g07080Os.46864.2.S1_x_at11/1110+3712113..3714512expressed protein
LOC_Os10g07080Os.46864.1.S1_at11/1110+3712113..3714512expressed protein
LOC_Os10g07090NANA10+3716556..3718800retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g07100NANA10+3719789..3720184hypothetical protein
LOC_Os10g07110Os.39852.1.S1_at11/1110+3722228..3723436hypothetical protein
LOC_Os10g07110OsAffx.13644.1.S1_at2/1110+3722228..3723436hypothetical protein
LOC_Os10g07120NANA10+3728354..3728674hypothetical protein
LOC_Os10g07130NANA10+3729738..3730297hypothetical protein
LOC_Os10g07139NANA10+3732952..3733307NA
LOC_Os10g07150OsAffx.30326.1.S1_x_at11/1110+3735725..3736491hypothetical protein
LOC_Os10g07160Os.50472.2.S1_x_at11/1110+3739255..3746752hypothetical protein
LOC_Os10g07160OsAffx.24330.1.S1_x_at10/1110+3739255..3746752hypothetical protein
LOC_Os10g07160OsAffx.24330.1.S1_at10/1110+3739255..3746752hypothetical protein
LOC_Os10g07160Os.24478.1.S1_at8/1110+3739255..3746752hypothetical protein
LOC_Os10g07160OsAffx.17844.1.S1_at7/1110+3739255..3746752hypothetical protein
LOC_Os10g07160Os.50472.2.S1_s_at1/1110+3739255..3746752hypothetical protein
LOC_Os10g07160Os.52323.1.S1_at1/1110+3739255..3746752hypothetical protein
LOC_Os10g07160OsAffx.20940.1.S1_at1/1110+3739255..3746752hypothetical protein
LOC_Os10g07180OsAffx.382.1.S1_at11/1110+3753512..3756356retrotransposon protein, putative, LINE subclass
LOC_Os10g07190NANA10+3758267..3762097hypothetical protein
LOC_Os10g07200Os.14575.1.S1_a_at11/1110+3763787..3765768Hsp20/alpha crystallin family protein, expressed
LOC_Os10g07210Os.14078.1.S1_s_at11/1110+3769863..3771545Hsp20/alpha crystallin family protein, expressed
LOC_Os10g07210Os.18511.1.S1_s_at11/1110+3769863..3771545Hsp20/alpha crystallin family protein, expressed
LOC_Os10g07210Os.18511.1.S1_at11/1110+3769863..3771545Hsp20/alpha crystallin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24330.1.S1_x_at--527--471Chr10:3741935..3741959 (25 bp)
ATCTGAGCGATAAGCCAGTAACCCT
LOC_Os10g07160
OsAffx.24330.1.S1_x_at--251--6471Chr10:3741927..3741951 (25 bp)
GATAAGCCAGTAACCCTGACAAACA
LOC_Os10g07160
OsAffx.24330.1.S1_x_at--74--1851Chr10:3741803..3741827 (25 bp)
ACGTCTTTGAAATCCGAGATATTGT
LOC_Os10g07160
OsAffx.24330.1.S1_x_at--871--6031Chr10:3741788..3741812 (25 bp)
GAGATATTGTCATTCTAATCGGGCT
LOC_Os10g07160
OsAffx.24330.1.S1_x_at--452--1791Chr10:3741657..3741681 (25 bp)
ACCGACTCTCTCTCAGAGATTGAGT
LOC_Os10g07160
OsAffx.24330.1.S1_x_at--390--6171NONE
GAGGAAATCGAGGATGTTACGTGAA
NONE
OsAffx.24330.1.S1_x_at--395--6817Chr12:20280173..20280679 (25 bp)
GTTTTCTTCTCTGGGATTTTGGCAT
NONE
OsAffx.24330.1.S1_x_at--93--177Chr11:11728937..11728957 (21 bp)
ATTTTGGCATCCCAGGCTTATGTGG
NONE
OsAffx.24330.1.S1_x_at--224--4891Chr10:3739404..3739428 (25 bp)
GCTTATGTGGTTTTCTTGGGTGTTA
LOC_Os10g07160
OsAffx.24330.1.S1_x_at--198--7751Chr10:3739386..3739410 (25 bp)
GGTGTTACAGTTACAGCAGTTCCCC
LOC_Os10g07160
OsAffx.24330.1.S1_x_at--58--3071Chr10:3739355..3739379 (25 bp)
AATCTCCCGAGCCACTTCTGGAAGA
LOC_Os10g07160
Target Sequence 
ATCTGAGCGATAAGCCAGTAACCCTGACAAACAAATTCTTCAAACACCCGAACGGAAATATCATCGAAGGATTTGGGATT
GTGCAAGATGTGCCTGTCTACTTTGAAGACAGGGAGGCGGTCTTGGATTTCCACGTCTTTGAAATCCGAGATATTGTCAT
TCTAATCGGGCTTTCCATTGAGCAACTCCTCATAAACACGCTCCGATTAGATAGCCTCAAGATAACTTTGGGAGGGAATG
AATTCTCAGTTCCATTCTCGCGGGCAAGGTTCGCCTTGACCGACTCTCTCTCAGAGATTGAGTTAGCGGAGGAGATCTGG
GAAGAAGAAGGGAAGGAGAAGAAAGGGAAAGAAGGAAGCGGAGGAAATCGAGGATGTTACGTGAAATATCGATCGAAGAT
ATCTTTGAGAAGTGTTTTCTTCTCTGGGATTTTGGCATCCCAGGCTTATGTGGTTTTCTTGGGTGTTACAGTTACAGCAG
TTCCCCCTCACGAATCTCCCGAGCCACTTCTGGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24330.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis