Browse Element(s) Details


Os.18511.1.S1_at

Description gb:AK107162.1
DB_XREF= gi:32992371
TID=Os.18511.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18511 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNAa0036D19.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-F03, full insert sequence.
FL= gb:AK107162.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0721011/11Hsp20/alpha crystallin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g07160Os.50472.2.S1_x_at11/1110+3739255..3746752hypothetical protein
LOC_Os10g07160OsAffx.24330.1.S1_x_at10/1110+3739255..3746752hypothetical protein
LOC_Os10g07160OsAffx.24330.1.S1_at10/1110+3739255..3746752hypothetical protein
LOC_Os10g07160Os.24478.1.S1_at8/1110+3739255..3746752hypothetical protein
LOC_Os10g07160OsAffx.17844.1.S1_at7/1110+3739255..3746752hypothetical protein
LOC_Os10g07160Os.50472.2.S1_s_at1/1110+3739255..3746752hypothetical protein
LOC_Os10g07160Os.52323.1.S1_at1/1110+3739255..3746752hypothetical protein
LOC_Os10g07160OsAffx.20940.1.S1_at1/1110+3739255..3746752hypothetical protein
LOC_Os10g07180OsAffx.382.1.S1_at11/1110+3753512..3756356retrotransposon protein, putative, LINE subclass
LOC_Os10g07190NANA10+3758267..3762097hypothetical protein
LOC_Os10g07200Os.14575.1.S1_a_at11/1110+3763787..3765768Hsp20/alpha crystallin family protein, expressed
LOC_Os10g07210Os.14078.1.S1_s_at11/1110+3769863..3771545Hsp20/alpha crystallin family protein, expressed
LOC_Os10g07210Os.18511.1.S1_s_at11/1110+3769863..3771545Hsp20/alpha crystallin family protein, expressed
LOC_Os10g07210Os.18511.1.S1_at11/1110+3769863..3771545Hsp20/alpha crystallin family protein, expressed
LOC_Os10g07229Os.15058.1.S1_at11/1110+3778087..3787975Alcohol dehydrogenase 2, putative, expressed
LOC_Os10g07229OsAffx.30327.1.S1_at11/1110+3778087..3787975Alcohol dehydrogenase 2, putative, expressed
LOC_Os10g07229Os.15058.2.S1_at11/1110+3778087..3787975Alcohol dehydrogenase 2, putative, expressed
LOC_Os10g07229Os.15058.3.S1_at10/1110+3778087..3787975Alcohol dehydrogenase 2, putative, expressed
LOC_Os10g07248Os.41695.3.S1_x_at11/1110+3795355..3807014transposon protein, putative, Mutator sub-class
LOC_Os10g07248Os.41695.15.S1_s_at11/1110+3795355..3807014transposon protein, putative, Mutator sub-class
LOC_Os10g07248Os.41695.2.S1_x_at9/1110+3795355..3807014transposon protein, putative, Mutator sub-class
LOC_Os10g07248Os.41695.5.S1_x_at8/1110+3795355..3807014transposon protein, putative, Mutator sub-class
LOC_Os10g07248Os.41695.4.S1_x_at1/1110+3795355..3807014transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18511.1.S1_at--554--4251Chr10:3770387..3770411 (25 bp)
CCGGGGCTTTCTCCGGCAGATCTGA
LOC_Os10g07210
Os.18511.1.S1_at--466--2331Chr10:3770307..3770331 (25 bp)
AAAGAGCAACTACAATACTCCTACT
LOC_Os10g07210
Os.18511.1.S1_at--962--1051Chr10:3770185..3770209 (25 bp)
AGGGTGTCCAGGCAAAGCTCACCTC
LOC_Os10g07210
Os.18511.1.S1_at--106--6031Chr10:3770126..3770150 (25 bp)
GAGAGTGTCCGCAGGAAGATCAATG
LOC_Os10g07210
Os.18511.1.S1_at--47--7471Chr10:3770122..3770146 (25 bp)
GTGTCCGCAGGAAGATCAATGTCGA
LOC_Os10g07210
Os.18511.1.S1_at--1049--6451Chr10:3770109..3770133 (25 bp)
GATCAATGTCGATATCTCTGTCAAG
LOC_Os10g07210
Os.18511.1.S1_at--546--371Chr10:3770108..3770132 (25 bp)
ATCAATGTCGATATCTCTGTCAAGT
LOC_Os10g07210
Os.18511.1.S1_at--1145--3191Chr10:3770106..3770130 (25 bp)
CAATGTCGATATCTCTGTCAAGTAG
LOC_Os10g07210
Os.18511.1.S1_at--847--751Chr10:3770104..3770128 (25 bp)
ATGTCGATATCTCTGTCAAGTAGAA
LOC_Os10g07210
Os.18511.1.S1_at--945--4031Chr10:3770100..3770124 (25 bp)
CGATATCTCTGTCAAGTAGAATTCA
LOC_Os10g07210
Os.18511.1.S1_at--782--451Chr10:3770096..3770120 (25 bp)
ATCTCTGTCAAGTAGAATTCAGTGA
LOC_Os10g07210
Target Sequence 
CCGGGGCTTTCTCCGGCAGATCTGATCNGTCGAGATCGACGAGGACGTGCTCGTCATCAAGAAGAANAAGAAGGCGAGCC
CAAAGAGCAACTACAATACTCCTACTTCCGGTGCCATTGCAGATCATCAGGAGGCCACCGCCGACGAGTTCAGCGGCGGC
GGGATCTACGCGCGGCTGCTCCTCCCGGCGGGGTACAGTAGAGAGGGTGTCCAGGCAAAGCTCACCTCCGGCGAGCTGAA
GCTCACCATTGGCAAGGTCAAGGAGAGTGTCCGCAGGAAGATCAATGTCGATATCTCTGTCAAGTAGAATTCAGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18511.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis