Browse Element(s) Details


OsAffx.382.1.S1_at

Description gb:NM_194958.1
DB_XREF= gi:37531275
TID=OsAffx.382.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative reverse transcriptase (OSJNAa0036D19.11), mRNA.
PROD=putative reverse transcriptase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0718011/11retrotransposon protein, putative, LINE subclass
LOC_Os08g101404/11retrotransposon protein, putative, unclassified
LOC_Os09g373102/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g07120NANA10+3728354..3728674hypothetical protein
LOC_Os10g07130NANA10+3729738..3730297hypothetical protein
LOC_Os10g07139NANA10+3732952..3733307NA
LOC_Os10g07150OsAffx.30326.1.S1_x_at11/1110+3735725..3736491hypothetical protein
LOC_Os10g07160Os.50472.2.S1_x_at11/1110+3739255..3746752hypothetical protein
LOC_Os10g07160OsAffx.24330.1.S1_x_at10/1110+3739255..3746752hypothetical protein
LOC_Os10g07160OsAffx.24330.1.S1_at10/1110+3739255..3746752hypothetical protein
LOC_Os10g07160Os.24478.1.S1_at8/1110+3739255..3746752hypothetical protein
LOC_Os10g07160OsAffx.17844.1.S1_at7/1110+3739255..3746752hypothetical protein
LOC_Os10g07160Os.50472.2.S1_s_at1/1110+3739255..3746752hypothetical protein
LOC_Os10g07160Os.52323.1.S1_at1/1110+3739255..3746752hypothetical protein
LOC_Os10g07160OsAffx.20940.1.S1_at1/1110+3739255..3746752hypothetical protein
LOC_Os10g07180OsAffx.382.1.S1_at11/1110+3753512..3756356retrotransposon protein, putative, LINE subclass
LOC_Os10g07190NANA10+3758267..3762097hypothetical protein
LOC_Os10g07200Os.14575.1.S1_a_at11/1110+3763787..3765768Hsp20/alpha crystallin family protein, expressed
LOC_Os10g07210Os.14078.1.S1_s_at11/1110+3769863..3771545Hsp20/alpha crystallin family protein, expressed
LOC_Os10g07210Os.18511.1.S1_s_at11/1110+3769863..3771545Hsp20/alpha crystallin family protein, expressed
LOC_Os10g07210Os.18511.1.S1_at11/1110+3769863..3771545Hsp20/alpha crystallin family protein, expressed
LOC_Os10g07229Os.15058.1.S1_at11/1110+3778087..3787975Alcohol dehydrogenase 2, putative, expressed
LOC_Os10g07229OsAffx.30327.1.S1_at11/1110+3778087..3787975Alcohol dehydrogenase 2, putative, expressed
LOC_Os10g07229Os.15058.2.S1_at11/1110+3778087..3787975Alcohol dehydrogenase 2, putative, expressed
LOC_Os10g07229Os.15058.3.S1_at10/1110+3778087..3787975Alcohol dehydrogenase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.382.1.S1_at--264--10671Chr10:3754078..3754102 (25 bp)
TTCCTGGAGGAATTGCTGCTGGTTA
LOC_Os10g07180
OsAffx.382.1.S1_at--982--4651Chr10:3754029..3754053 (25 bp)
GCGTGGTCGGAGATTTCAACCTCTT
LOC_Os10g07180
OsAffx.382.1.S1_at--393--2631Chr10:3754012..3754036 (25 bp)
AACCTCTTGGCCACGGACGGTGATA
LOC_Os10g07180
OsAffx.382.1.S1_at--176--6452Chr10:3753959..3753983 (25 bp)
GATCAGCAAGTTTAGGCACACCATT
LOC_Os10g07180
OsAffx.382.1.S1_at--475--1052Chr10:3753915..3753939 (25 bp)
AGGTGTATCTGTTTGGGCGTCGCTA
LOC_Os10g07180
OsAffx.382.1.S1_at--680--8132Chr10:3753818..3753842 (25 bp)
GGAAATTTTCCGTGATGCTCACCTG
LOC_Os10g07180
OsAffx.382.1.S1_at--548--4713Chr10:3753752..3753776 (25 bp)
GCTGGCCTGCGATCAGATGATGCAT
LOC_Os10g07180
OsAffx.382.1.S1_at--609--2812Chr10:3753712..3753736 (25 bp)
AAGTTCGAATCCTATTGGGCCAAAT
LOC_Os10g07180
OsAffx.382.1.S1_at--538--191Chr10:3753681..3753705 (25 bp)
ATTTCGAGGATGTGGTCTGTCAGGC
LOC_Os10g07180
OsAffx.382.1.S1_at--919--1671Chr10:3753619..3753643 (25 bp)
AGCCTTCATTTCAAGCTGCGTGCAA
LOC_Os10g07180
OsAffx.382.1.S1_at--278--911Chr10:3753565..3753589 (25 bp)
AGGCGTATCAGTGAGCTCCGTCAGC
LOC_Os10g07180
Target Sequence 
TTCCTGGAGGAATTGCTGCTGGTTAGGCAGCTAGTGGTCGGGGCCTGGTGCGTGGTCGGAGATTTCAACCTCTTGGCCAC
GGACGGTGATAAAAACAATGGGAATGTAAATCGACGGTTGATCAGCAAGTTTAGGCACACCATTGATGCCCTTGAGCTGC
GCGAGGTGTATCTGTTTGGGCGTCGCTATACATGGAGCAATGAGCAAGAACGACCGACTCTAACAAAAATCGACAAGGTG
CTAGTAAATGGGGATTGGGAGGAAATTTTCCGTGATGCTCACCTGCAAGCGCTCAGCTCCTCTGCCTCTGATCACTGTCC
CCTGTTGCTGGCCTGCGATCAGATGATGCATAGGCCGAGGAAGTTCAAGTTCGAATCCTATTGGGCCAAATTGGAGGATT
TCGAGGATGTGGTCTGTCAGGCGTGGGAGGCAGCGCCGGCTGGCTCCAATGCACTCAGCAGCCTTCATTTCAAGCTGCGT
GCAACTGCTGCTGCCTTACGGTCCTGGGGAGCCAGGCGTATCAGTGAGCTCCGTCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.382.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis