Browse Element(s) Details


Os.15058.1.S1_at

Description gb:AK060781.1
DB_XREF= gi:32970799
TID=Os.15058.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15058 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative alcohol dehydrogenase (OSJNBa0050E08.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-033-C06, full insert sequence.
FL= gb:AK060781.1 gb:AK065882.1 gb:AK104537.1 gb:AK061577.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0722911/11Alcohol dehydrogenase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g07180OsAffx.382.1.S1_at11/1110+3753512..3756356retrotransposon protein, putative, LINE subclass
LOC_Os10g07190NANA10+3758267..3762097hypothetical protein
LOC_Os10g07200Os.14575.1.S1_a_at11/1110+3763787..3765768Hsp20/alpha crystallin family protein, expressed
LOC_Os10g07210Os.14078.1.S1_s_at11/1110+3769863..3771545Hsp20/alpha crystallin family protein, expressed
LOC_Os10g07210Os.18511.1.S1_s_at11/1110+3769863..3771545Hsp20/alpha crystallin family protein, expressed
LOC_Os10g07210Os.18511.1.S1_at11/1110+3769863..3771545Hsp20/alpha crystallin family protein, expressed
LOC_Os10g07229Os.15058.1.S1_at11/1110+3778087..3787975Alcohol dehydrogenase 2, putative, expressed
LOC_Os10g07229OsAffx.30327.1.S1_at11/1110+3778087..3787975Alcohol dehydrogenase 2, putative, expressed
LOC_Os10g07229Os.15058.2.S1_at11/1110+3778087..3787975Alcohol dehydrogenase 2, putative, expressed
LOC_Os10g07229Os.15058.3.S1_at10/1110+3778087..3787975Alcohol dehydrogenase 2, putative, expressed
LOC_Os10g07248Os.41695.3.S1_x_at11/1110+3795355..3807014transposon protein, putative, Mutator sub-class
LOC_Os10g07248Os.41695.15.S1_s_at11/1110+3795355..3807014transposon protein, putative, Mutator sub-class
LOC_Os10g07248Os.41695.2.S1_x_at9/1110+3795355..3807014transposon protein, putative, Mutator sub-class
LOC_Os10g07248Os.41695.5.S1_x_at8/1110+3795355..3807014transposon protein, putative, Mutator sub-class
LOC_Os10g07248Os.41695.4.S1_x_at1/1110+3795355..3807014transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0001666biological_processresponse to hypoxia
GO:0045333biological_processcellular respiration
GO:0004022molecular_functionalcohol dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15058.1.S1_at--897--7971Chr10:3778727..3778751 (25 bp)
GGATCCATGCAACGCCCAGGATGCT
LOC_Os10g07229
Os.15058.1.S1_at--445--3831Chr10:3778704..3778728 (25 bp)
CTGCCGCTGCATCCAATGGAGTTAT
LOC_Os10g07229
Os.15058.1.S1_at--694--2911Chr10:3778690..3778714 (25 bp)
AATGGAGTTATTTGACGGCCGTCGG
LOC_Os10g07229
Os.15058.1.S1_at--658--1951Chr10:3778662..3778686 (25 bp)
ACTGGCTGCGTTTTTGGTGACTTCA
LOC_Os10g07229
Os.15058.1.S1_at--79--1151Chr10:3778631..3778655 (25 bp)
AGTCCCAGCTGCCTGAAATCGTGGA
LOC_Os10g07229
Os.15058.1.S1_at--246--351Chr10:3778478..3778502 (25 bp)
ATAACACAAGAGTTGCCCTTCGCCG
LOC_Os10g07229
Os.15058.1.S1_at--903--10631Chr10:3778460..3778484 (25 bp)
TTCGCCGACATCAACAAAGCTTTCC
LOC_Os10g07229
Os.15058.1.S1_at--406--9711Chr10:3778450..3778474 (25 bp)
TCAACAAAGCTTTCCAGCTGCTGGA
LOC_Os10g07229
Os.15058.1.S1_at--90--9051Chr10:3778200..3778224 (25 bp)
TGCAGTCGCGAGAATTGAGCACACG
LOC_Os10g07229
Os.15058.1.S1_at--989--5931Chr10:3778184..3778208 (25 bp)
GAGCACACGATTGGTTACATACATG
LOC_Os10g07229
Os.15058.1.S1_at--1150--8431Chr10:3778139..3778163 (25 bp)
GGCCACACACCATTTTTATCTATTA
LOC_Os10g07229
Target Sequence 
GGATCCATGCAACGCCCAGGATGCTGCCGCTGCATCCAATGGAGTTATTTGACGGCCGTCGGATCACTGGCTGCGTTTTT
GGTGACTTCAAGGGAAAGTCCCAGCTGCCTGAAATCGTGGAGAAGTGCATGCAGGGTGAGATTAACATAAATTTTGATGG
GTTCATAACACAAGAGTTGCCCTTCGCCGACATCAACAAAGCTTTCCAGCTGCTGGAAGAGGGGAAGTCACTCAGATGTC
TGCTCCATGTCTGATGAAACTTGTGGATTGTAAATTTGAATACACAATAAATGAATCATAAATGTTTTCNGCGGTTTCAA
NGGTGTATAATTTTCATATGCATGTATGTTTTGTACATAAAATGGGTTGAACTTCGTTAAAGAAAAGACAAATTGTTAAT
TAGTAGAATGCAGTATTAATATTTGTAACAGGTGAGTGTGGGTGTGCAGTCGCGAGAATTGAGCACACGATTGGTTACAT
ACATGCTCGAGTTGCTAGNCAGTAGGGCCACACACCATTTTTATCTATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15058.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis