Browse Element(s) Details


Os.18511.1.S1_s_at

Description gb:AK107162.1
DB_XREF= gi:32992371
TID=Os.18511.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18511 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNAa0036D19.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-F03, full insert sequence.
FL= gb:AK107162.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0721011/11Hsp20/alpha crystallin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g07160Os.50472.2.S1_x_at11/1110+3739255..3746752hypothetical protein
LOC_Os10g07160OsAffx.24330.1.S1_x_at10/1110+3739255..3746752hypothetical protein
LOC_Os10g07160OsAffx.24330.1.S1_at10/1110+3739255..3746752hypothetical protein
LOC_Os10g07160Os.24478.1.S1_at8/1110+3739255..3746752hypothetical protein
LOC_Os10g07160OsAffx.17844.1.S1_at7/1110+3739255..3746752hypothetical protein
LOC_Os10g07160Os.50472.2.S1_s_at1/1110+3739255..3746752hypothetical protein
LOC_Os10g07160Os.52323.1.S1_at1/1110+3739255..3746752hypothetical protein
LOC_Os10g07160OsAffx.20940.1.S1_at1/1110+3739255..3746752hypothetical protein
LOC_Os10g07180OsAffx.382.1.S1_at11/1110+3753512..3756356retrotransposon protein, putative, LINE subclass
LOC_Os10g07190NANA10+3758267..3762097hypothetical protein
LOC_Os10g07200Os.14575.1.S1_a_at11/1110+3763787..3765768Hsp20/alpha crystallin family protein, expressed
LOC_Os10g07210Os.14078.1.S1_s_at11/1110+3769863..3771545Hsp20/alpha crystallin family protein, expressed
LOC_Os10g07210Os.18511.1.S1_s_at11/1110+3769863..3771545Hsp20/alpha crystallin family protein, expressed
LOC_Os10g07210Os.18511.1.S1_at11/1110+3769863..3771545Hsp20/alpha crystallin family protein, expressed
LOC_Os10g07229Os.15058.1.S1_at11/1110+3778087..3787975Alcohol dehydrogenase 2, putative, expressed
LOC_Os10g07229OsAffx.30327.1.S1_at11/1110+3778087..3787975Alcohol dehydrogenase 2, putative, expressed
LOC_Os10g07229Os.15058.2.S1_at11/1110+3778087..3787975Alcohol dehydrogenase 2, putative, expressed
LOC_Os10g07229Os.15058.3.S1_at10/1110+3778087..3787975Alcohol dehydrogenase 2, putative, expressed
LOC_Os10g07248Os.41695.3.S1_x_at11/1110+3795355..3807014transposon protein, putative, Mutator sub-class
LOC_Os10g07248Os.41695.15.S1_s_at11/1110+3795355..3807014transposon protein, putative, Mutator sub-class
LOC_Os10g07248Os.41695.2.S1_x_at9/1110+3795355..3807014transposon protein, putative, Mutator sub-class
LOC_Os10g07248Os.41695.5.S1_x_at8/1110+3795355..3807014transposon protein, putative, Mutator sub-class
LOC_Os10g07248Os.41695.4.S1_x_at1/1110+3795355..3807014transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18511.1.S1_s_at--444--1291Chr10:3770356..3770380 (25 bp)
AGATCGACGAGGACGTGCTCGTCAT
LOC_Os10g07210
Os.18511.1.S1_s_at--205--6191Chr10:3770348..3770372 (25 bp)
GAGGACGTGCTCGTCATCAAGAAGA
LOC_Os10g07210
Os.18511.1.S1_s_at--1090--111Chr10:3770060..3770084 (25 bp)
ATTCATATATGGTCATCTGTGATGA
LOC_Os10g07210
Os.18511.1.S1_s_at--1134--471Chr10:3770046..3770070 (25 bp)
ATCTGTGATGAAGGATCGGAGCAAC
LOC_Os10g07210
Os.18511.1.S1_s_at--661--431Chr10:3770009..3770033 (25 bp)
ATCTTGCCTAAGATTCTAGCTCATA
LOC_Os10g07210
Os.18511.1.S1_s_at--1026--4451Chr10:3770004..3770028 (25 bp)
GCCTAAGATTCTAGCTCATATATAT
LOC_Os10g07210
Os.18511.1.S1_s_at--867--331Chr10:3769940..3769964 (25 bp)
ATACATCCTTTGCTGTTTTCCTAAG
LOC_Os10g07210
Os.18511.1.S1_s_at--660--3671Chr10:3769933..3769957 (25 bp)
CTTTGCTGTTTTCCTAAGGTTGAGT
LOC_Os10g07210
Os.18511.1.S1_s_at--958--6791Chr10:3769926..3769950 (25 bp)
GTTTTCCTAAGGTTGAGTATGCTTA
LOC_Os10g07210
Os.18511.1.S1_s_at--1107--9771Chr10:3769919..3769943 (25 bp)
TAAGGTTGAGTATGCTTATGTATGC
LOC_Os10g07210
Os.18511.1.S1_s_at--336--3091Chr10:3769867..3769891 (25 bp)
AATAAAATGATCATCTTTGTTGTGC
LOC_Os10g07210
Target Sequence 
AGATCGACGAGGACGTGCTCGTCATCAAGAAGAANAAGAAGGCGAGCCCAAAGAGCAACTACAATACTCCTACTTCCGGT
GCCATTGCAGATCATCAGGAGGCCACCGCCGACGAGTTCAGCGGCGGCGGGATCTACGCGCGGCTGCTCCTCCCGGCGGG
GTACAGTAGAGAGGGTGTCCAGGCAAAGCTCACCTCCGGCGAGCTGAAGCTCACCATTGGCAAGGTCAAGGAGAGTGTCC
GCAGGAAGATCAATGTCGATATCTCTGTCAAGTAGAATTCAGTGAGCTTCCATGGAATTCATATATGGTCATCTGTGATG
AAGGATCGGAGCAACGGTGCAAGTTATATCTTGCCTAAGATTCTAGCTCATATATATCNNAATAACTGGTCCATGATCTG
ATCTCTCTCTNTNTATGTATACATCCTTTGCTGTTTTCCTAAGGTTGAGTATGCTTATGTATGCAAGCTTTATTCCGGCT
GCATCCNAATAAATAAAATGATCATCTTTGTTGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18511.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis