Browse Element(s) Details


Os.50472.2.S1_x_at

Description gb:AK121327.1
DB_XREF= gi:37990950
TID=Os.50472.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50472 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023064N19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023117H21, full insert sequence.
FL= gb:AK121327.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0716011/11hypothetical protein
LOC_Os04g175101/11retrotransposon, putative, centromere-specific
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g07080Os.46864.2.S1_x_at11/1110+3712113..3714512expressed protein
LOC_Os10g07080Os.46864.1.S1_at11/1110+3712113..3714512expressed protein
LOC_Os10g07090NANA10+3716556..3718800retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g07100NANA10+3719789..3720184hypothetical protein
LOC_Os10g07110Os.39852.1.S1_at11/1110+3722228..3723436hypothetical protein
LOC_Os10g07110OsAffx.13644.1.S1_at2/1110+3722228..3723436hypothetical protein
LOC_Os10g07120NANA10+3728354..3728674hypothetical protein
LOC_Os10g07130NANA10+3729738..3730297hypothetical protein
LOC_Os10g07139NANA10+3732952..3733307NA
LOC_Os10g07150OsAffx.30326.1.S1_x_at11/1110+3735725..3736491hypothetical protein
LOC_Os10g07160Os.50472.2.S1_x_at11/1110+3739255..3746752hypothetical protein
LOC_Os10g07160OsAffx.24330.1.S1_x_at10/1110+3739255..3746752hypothetical protein
LOC_Os10g07160OsAffx.24330.1.S1_at10/1110+3739255..3746752hypothetical protein
LOC_Os10g07160Os.24478.1.S1_at8/1110+3739255..3746752hypothetical protein
LOC_Os10g07160OsAffx.17844.1.S1_at7/1110+3739255..3746752hypothetical protein
LOC_Os10g07160Os.50472.2.S1_s_at1/1110+3739255..3746752hypothetical protein
LOC_Os10g07160Os.52323.1.S1_at1/1110+3739255..3746752hypothetical protein
LOC_Os10g07160OsAffx.20940.1.S1_at1/1110+3739255..3746752hypothetical protein
LOC_Os10g07180OsAffx.382.1.S1_at11/1110+3753512..3756356retrotransposon protein, putative, LINE subclass
LOC_Os10g07190NANA10+3758267..3762097hypothetical protein
LOC_Os10g07200Os.14575.1.S1_a_at11/1110+3763787..3765768Hsp20/alpha crystallin family protein, expressed
LOC_Os10g07210Os.14078.1.S1_s_at11/1110+3769863..3771545Hsp20/alpha crystallin family protein, expressed
LOC_Os10g07210Os.18511.1.S1_s_at11/1110+3769863..3771545Hsp20/alpha crystallin family protein, expressed
LOC_Os10g07210Os.18511.1.S1_at11/1110+3769863..3771545Hsp20/alpha crystallin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50472.2.S1_x_at--630--10252Chr10:3741282..3741306 (25 bp)
TTTGATTACCCGCTGCCCATGGAGG
LOC_Os10g07160
Os.50472.2.S1_x_at--455--3671Chr10:3739727..3739751 (25 bp)
CTTTTCAGGTACTTGCTGTTGATAT
LOC_Os10g07160
Os.50472.2.S1_x_at--793--3631Chr10:3739716..3739740 (25 bp)
CTTGCTGTTGATATGTTTGCGTGAA
LOC_Os10g07160
Os.50472.2.S1_x_at--653--3871Chr10:3739712..3739736 (25 bp)
CTGTTGATATGTTTGCGTGAAGGGA
LOC_Os10g07160
Os.50472.2.S1_x_at--898--8751Chr10:3739627..3739651 (25 bp)
TGATAGGATTACTTGTGTTTAGACA
LOC_Os10g07160
Os.50472.2.S1_x_at--1100--2171Chr10:3739587..3739611 (25 bp)
ACACTAGAAGTGTTGACCATTAATG
LOC_Os10g07160
Os.50472.2.S1_x_at--682--7411Chr10:3739578..3739602 (25 bp)
GTGTTGACCATTAATGAGCTACCTT
LOC_Os10g07160
Os.50472.2.S1_x_at--411--5831Chr10:3739573..3739597 (25 bp)
GACCATTAATGAGCTACCTTTTCAA
LOC_Os10g07160
Os.50472.2.S1_x_at--547--691Chr10:3739565..3739589 (25 bp)
ATGAGCTACCTTTTCAAGCCTATCC
LOC_Os10g07160
Os.50472.2.S1_x_at--820--3696Chr11:11728848..11728872 (25 bp)
CTATATGTTGATGCTTCCGCGATGT
NONE
Os.50472.2.S1_x_at--1001--10653Chr11:11728862..11728885 (24 bp)
TTCCGCGATGTTTTCTTGTCTAAGG
NONE
Target Sequence 
TTTGATTACCCGCTGCCCATGGAGGCTTAGGTGATGCCACTTCGGAATGCAACTAGAGTTCATCTCATCATCAGTGAAGT
CTTTTCAGGTACTTGCTGTTGATATGTTTGCGTGAAGGGATGGGATTAGCTACACTGTTGCACGACATGATCTCACTTAG
TCATGATTATTGTAATATGCTGATAGGATTACTTGTGTTTAGACATAATGGGTTAATTAAACACTAGAAGTGTTGACCAT
TAATGAGCTACCTTTTCAAGCCTATCCCTACATGTCAGTCCATTGTTGTATCATAACCTTAATCTATATGTTGATGCTTC
CGCGATGTTTTCTTGTCTAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50472.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis