Browse Element(s) Details


Os.14575.1.S1_a_at

Description gb:AK064267.1
DB_XREF= gi:32974285
TID=Os.14575.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.14575 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNAa0036D19.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-E01, full insert sequence.
FL= gb:AK064267.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0720011/11Hsp20/alpha crystallin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g07160Os.50472.2.S1_x_at11/1110+3739255..3746752hypothetical protein
LOC_Os10g07160OsAffx.24330.1.S1_x_at10/1110+3739255..3746752hypothetical protein
LOC_Os10g07160OsAffx.24330.1.S1_at10/1110+3739255..3746752hypothetical protein
LOC_Os10g07160Os.24478.1.S1_at8/1110+3739255..3746752hypothetical protein
LOC_Os10g07160OsAffx.17844.1.S1_at7/1110+3739255..3746752hypothetical protein
LOC_Os10g07160Os.50472.2.S1_s_at1/1110+3739255..3746752hypothetical protein
LOC_Os10g07160Os.52323.1.S1_at1/1110+3739255..3746752hypothetical protein
LOC_Os10g07160OsAffx.20940.1.S1_at1/1110+3739255..3746752hypothetical protein
LOC_Os10g07180OsAffx.382.1.S1_at11/1110+3753512..3756356retrotransposon protein, putative, LINE subclass
LOC_Os10g07190NANA10+3758267..3762097hypothetical protein
LOC_Os10g07200Os.14575.1.S1_a_at11/1110+3763787..3765768Hsp20/alpha crystallin family protein, expressed
LOC_Os10g07210Os.14078.1.S1_s_at11/1110+3769863..3771545Hsp20/alpha crystallin family protein, expressed
LOC_Os10g07210Os.18511.1.S1_s_at11/1110+3769863..3771545Hsp20/alpha crystallin family protein, expressed
LOC_Os10g07210Os.18511.1.S1_at11/1110+3769863..3771545Hsp20/alpha crystallin family protein, expressed
LOC_Os10g07229Os.15058.1.S1_at11/1110+3778087..3787975Alcohol dehydrogenase 2, putative, expressed
LOC_Os10g07229OsAffx.30327.1.S1_at11/1110+3778087..3787975Alcohol dehydrogenase 2, putative, expressed
LOC_Os10g07229Os.15058.2.S1_at11/1110+3778087..3787975Alcohol dehydrogenase 2, putative, expressed
LOC_Os10g07229Os.15058.3.S1_at10/1110+3778087..3787975Alcohol dehydrogenase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14575.1.S1_a_at--658--6011Chr10:3764268..3764292 (25 bp)
GAGAGAGCCACCCAAGAACAATCTT
LOC_Os10g07200
Os.14575.1.S1_a_at--233--2991Chr10:3764231..3764255 (25 bp)
AATGTGCCAACGAAGGATGATCCTC
LOC_Os10g07200
Os.14575.1.S1_a_at--234--2991Chr10:3764165..3764189 (25 bp)
AATGTGCCACCGAAGGATGATCCTC
LOC_Os10g07200
Os.14575.1.S1_a_at--735--7991Chr10:3764151..3764175 (25 bp)
GGATGATCCTCCTGCGAGAGAACCA
LOC_Os10g07200
Os.14575.1.S1_a_at--984--2971Chr10:3764099..3764123 (25 bp)
AATGTGGCACCCAAGGATGATCCTC
LOC_Os10g07200
Os.14575.1.S1_a_at--736--7991Chr10:3764085..3764109 (25 bp)
GGATGATCCTCCTGCCAATGAGGCA
LOC_Os10g07200
Os.14575.1.S1_a_at--523--2131Chr10:3764036..3764060 (25 bp)
ACAGGTGTGCCGACGAAGGATCCTC
LOC_Os10g07200
Os.14575.1.S1_a_at--680--2911Chr10:3764021..3764045 (25 bp)
AAGGATCCTCCTAGAAATGCCAATG
LOC_Os10g07200
Os.14575.1.S1_a_at--26--1431Chr10:3764009..3764033 (25 bp)
AGAAATGCCAATGAGCCGCCAAAGA
LOC_Os10g07200
Os.14575.1.S1_a_at--755--2731Chr10:3763988..3764012 (25 bp)
AAGAATCCTCCTGGTACCCGTGAAG
LOC_Os10g07200
Os.14575.1.S1_a_at--619--9951Chr10:3763974..3763998 (25 bp)
TACCCGTGAAGCCAACCTAGGATGA
LOC_Os10g07200
Target Sequence 
GAGAGAGCCACCCAAGAACAATCTTNCCGGAGGTAGAAATGTGCCAACGAAGGATGATCCTCCTGCNAGGGAGCTACCGA
AGAATAATTTGGCCGGAGGTAGAAATGTGCCACCGAAGGATGATCCTCCTGCGAGAGAACCACCAAAGAATAATCTTGNC
CGGAGGTAGAAATGTGGCACCCAAGGATGATCCTCCTGCCAATGAGGCACCAAGGAATAATCTTGCAGGAGGTACAGGTG
TGCCGACGAAGGATCCTCCTAGAAATGCCAATGAGCCGCCAAAGAATCCTCCTGGTACCCGTGAAGCCAACCTAGGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14575.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis