Browse Element(s) Details


OsAffx.17844.1.S1_at

Description tigr:9637.m01923
TID=OsAffx.17844.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2216010/11hypothetical protein
LOC_Os06g257708/11expressed protein
LOC_Os10g071607/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g22110OsAffx.22465.1.S1_at1/119+13389297..13394136retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g22120NANA9+13395570..13400463retrotransposon protein, putative, unclassified
LOC_Os09g22130OsAffx.17843.1.S1_at11/119+13402497..13403049hypothetical protein
LOC_Os09g22140NANA9+13404183..13404452hypothetical protein
LOC_Os09g22150OsAffx.18864.1.S1_at2/119+13405171..13408303transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g22150OsAffx.8372.1.S1_at2/119+13405171..13408303transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g22160OsAffx.17844.1.S1_at10/119+13415253..13416210hypothetical protein
LOC_Os09g22160Os.24478.1.S1_at5/119+13415253..13416210hypothetical protein
LOC_Os09g22170NANA9+13418496..13419538retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g22180NANA9+13420567..13421655retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g22190NANA9+13423129..13424518transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g22200OsAffx.25936.5.S1_x_at4/119+13426804..13429905transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g22200OsAffx.25936.2.S1_x_at3/119+13426804..13429905transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g22200OsAffx.25936.7.S1_s_at1/119+13426804..13429905transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g22200OsAffx.25936.1.S1_s_at1/119+13426804..13429905transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g22210OsAffx.7616.1.S1_at3/119+13433663..13434462hypothetical protein
LOC_Os09g22210OsAffx.29786.1.S1_x_at1/119+13433663..13434462hypothetical protein
LOC_Os09g22220NANA9+13439221..13442439hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17844.1.S1_at--1040--8011NONE
GGACGCCAAGAATTAGAGGTATCGA
NONE
OsAffx.17844.1.S1_at--1009--6155Chr09:13416002..13416026 (25 bp)
GAGGTATCGAATTGTTAATCTATGC
LOC_Os09g22160
OsAffx.17844.1.S1_at--616--4116Chr09:13416009..13416033 (25 bp)
CGAATTGTTAATCTATGCTGCTTTT
LOC_Os09g22160
OsAffx.17844.1.S1_at--208--58Chr11:11727797..11727821 (25 bp)
ATTGTTAATCTATGCTGCTTTTATA
NONE
OsAffx.17844.1.S1_at--414--5353Chr09:13416038..13416062 (25 bp)
GAAGATTATCGGTGATTTGCGTTAT
LOC_Os09g22160
OsAffx.17844.1.S1_at--662--9431Chr09:13416046..13416070 (25 bp)
TCGGTGATTTGCGTTATGTTGTTTG
LOC_Os09g22160
OsAffx.17844.1.S1_at--317--7411Chr09:13416049..13416073 (25 bp)
GTGATTTGCGTTATGTTGTTTGGGT
LOC_Os09g22160
OsAffx.17844.1.S1_at--1013--10115Chr11:11727845..11727870 (25 bp)
TATGTTGTTTGGGTGGGATCCCAGC
NONE
OsAffx.17844.1.S1_at--1012--6375Chr11:11727862..11727946 (25 bp)
GATCCCAGCGTAGGAAGCGTGATGC
NONE
OsAffx.17844.1.S1_at--600--4355Chr11:11727866..11727950 (25 bp)
CCAGCGTAGGAAGCGTGATGCCACT
NONE
OsAffx.17844.1.S1_at--664--3975Chr11:11727870..11727954 (25 bp)
CGTAGGAAGCGTGATGCCACTTCGG
NONE
Target Sequence 
GGACGCCAAGAATTAGAGGTATCGAATTGTTAATCTATGCTGCTTTTATAGGAAGATTATCGGTGATTTGCGTTATGTTG
TTTGGGTGGGATCCCAGCGTAGGAAGCGTGATGCCACTTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17844.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis