Browse Element(s) Details


Os.46864.2.S1_x_at

Description gb:NM_194951.1
DB_XREF= gi:37531261
TID=Os.46864.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46864 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0036D19.10), mRNA.
PROD=unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0708011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g07050OsAffx.20723.1.S1_x_at11/1110+3685751..3687513hypothetical protein
LOC_Os10g07060NANA10+3700566..3701397B3 DNA binding domain containing protein, expressed
LOC_Os10g07069NANA10+3708380..3709161NA
LOC_Os10g07080Os.46864.2.S1_x_at11/1110+3712113..3714512expressed protein
LOC_Os10g07080Os.46864.1.S1_at11/1110+3712113..3714512expressed protein
LOC_Os10g07090NANA10+3716556..3718800retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g07100NANA10+3719789..3720184hypothetical protein
LOC_Os10g07110Os.39852.1.S1_at11/1110+3722228..3723436hypothetical protein
LOC_Os10g07110OsAffx.13644.1.S1_at2/1110+3722228..3723436hypothetical protein
LOC_Os10g07120NANA10+3728354..3728674hypothetical protein
LOC_Os10g07130NANA10+3729738..3730297hypothetical protein
LOC_Os10g07139NANA10+3732952..3733307NA
LOC_Os10g07150OsAffx.30326.1.S1_x_at11/1110+3735725..3736491hypothetical protein
LOC_Os10g07160Os.50472.2.S1_x_at11/1110+3739255..3746752hypothetical protein
LOC_Os10g07160OsAffx.24330.1.S1_x_at10/1110+3739255..3746752hypothetical protein
LOC_Os10g07160OsAffx.24330.1.S1_at10/1110+3739255..3746752hypothetical protein
LOC_Os10g07160Os.24478.1.S1_at8/1110+3739255..3746752hypothetical protein
LOC_Os10g07160OsAffx.17844.1.S1_at7/1110+3739255..3746752hypothetical protein
LOC_Os10g07160Os.50472.2.S1_s_at1/1110+3739255..3746752hypothetical protein
LOC_Os10g07160Os.52323.1.S1_at1/1110+3739255..3746752hypothetical protein
LOC_Os10g07160OsAffx.20940.1.S1_at1/1110+3739255..3746752hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46864.2.S1_x_at--274--4071Chr10:3712748..3712772 (25 bp)
CGAGGAGGGTGCGTCTGCCACTTCC
LOC_Os10g07080
Os.46864.2.S1_x_at--207--611Chr10:3712863..3712887 (25 bp)
ATGCCCGCACCTAGCATCTTGGTGG
LOC_Os10g07080
Os.46864.2.S1_x_at--870--9511Chr10:3712900..3712924 (25 bp)
TCTACTTCAGGAGCCCTGGGAGGAT
LOC_Os10g07080
Os.46864.2.S1_x_at--153--7931Chr10:3712921..3712945 (25 bp)
GGATTCTCCGGTACTGGTTCGGCGA
LOC_Os10g07080
Os.46864.2.S1_x_at--968--6231Chr10:3712949..3712973 (25 bp)
GATGGAGCATCTGTCATACGTCGAC
LOC_Os10g07080
Os.46864.2.S1_x_at--250--6751Chr10:3712982..3713006 (25 bp)
GTTCATCACTCAGGAGACACGCGGA
LOC_Os10g07080
Os.46864.2.S1_x_at--30--5991Chr10:3712995..3713019 (25 bp)
GAGACACGCGGAACGGTGCTCATGC
LOC_Os10g07080
Os.46864.2.S1_x_at--786--5911Chr10:3713039..3713063 (25 bp)
GAGCTTCGCGGCTATGTACGGCGAC
LOC_Os10g07080
Os.46864.2.S1_x_at--993--6991Chr10:3713054..3713078 (25 bp)
GTACGGCGACATGACGATCAGCTTC
LOC_Os10g07080
Os.46864.2.S1_x_at--309--5751Chr10:3713100..3713124 (25 bp)
GACGGTGCTGTTGATTGGGTCCACA
LOC_Os10g07080
Os.46864.2.S1_x_at--743--5751Chr10:3714132..3714153 (22 bp)
GACGGTTTACATATCTCTGTCGCTA
LOC_Os10g07080
Target Sequence 
CGAGGAGGGTGCGTCTGCCACTTCCGCCTTCAACTACACCTCCTCCTCCGGCTCCTGGACCGCTTCGCCCGCCGCCGCGG
CCGCCGTCGCCGACGAGGATGACTGGGGATTTCGCATGCCCGCACCTAGCATCTTGGTGGGGGGGACCACGCTCTACTTC
AGGAGCCCTGGGAGGATTCTCCGGTACTGGTTCGGCGACGAGATGGAGCATCTGTCATACGTCGACATCCCGCCGTTCAT
CACTCAGGAGACACGCGGAACGGTGCTCATGCCGGCGGCGGACGGGAGGCTGAGCTTCGCGGCTATGTACGGCGACATGA
CGATCAGCTTCTGGGAAACCGAGGTCAGCGCTGACGGTGCTGTTGATTGGGTCCACACCCAGAACGCGCTCGTGAGCATC
CCCCTACCTGGAGTCCTCATCGGCGCCGCCGCGAGCTTGCTTTTCGTCCGCACCGAGGACGGTTTACATATCTCTGTCGC
TA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46864.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis