Browse Element(s) Details


OsAffx.20723.1.S1_x_at

Description tigr:9638.m00621
TID=OsAffx.20723.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AC116600 Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0705011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g07030OsAffx.6598.1.S1_at11/1110+3667978..3669950hypothetical protein
LOC_Os10g07040OsAffx.18163.1.S1_at11/1110+3680945..3682922Chalcone synthase 8, putative
LOC_Os10g07050OsAffx.20723.1.S1_x_at11/1110+3685751..3687513hypothetical protein
LOC_Os10g07060NANA10+3700566..3701397B3 DNA binding domain containing protein, expressed
LOC_Os10g07069NANA10+3708380..3709161NA
LOC_Os10g07080Os.46864.2.S1_x_at11/1110+3712113..3714512expressed protein
LOC_Os10g07080Os.46864.1.S1_at11/1110+3712113..3714512expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20723.1.S1_x_at--220--711Chr10:3686286..3686310 (25 bp)
ATGAGGAGGCACTAGCAAGCAGCGA
LOC_Os10g07050
OsAffx.20723.1.S1_x_at--748--931Chr10:3686280..3686304 (25 bp)
AGGCACTAGCAAGCAGCGAGAGGAT
LOC_Os10g07050
OsAffx.20723.1.S1_x_at--722--4131Chr10:3686250..3686274 (25 bp)
CGCTGCCGGCAAGGATAGTCGAAAC
LOC_Os10g07050
OsAffx.20723.1.S1_x_at--87--9191Chr10:3686247..3686271 (25 bp)
TGCCGGCAAGGATAGTCGAAACATG
LOC_Os10g07050
OsAffx.20723.1.S1_x_at--644--8411Chr10:3686149..3686173 (25 bp)
GGCCGTCGCCGAGAACGGTCGCGGA
LOC_Os10g07050
OsAffx.20723.1.S1_x_at--196--7711Chr10:3686121..3686145 (25 bp)
GGGTGCGAGCACAGCCGTCGGCGGC
LOC_Os10g07050
OsAffx.20723.1.S1_x_at--1089--7191Chr10:3686078..3686102 (25 bp)
GTCGTGGAGGTCACCGAGAGGCGCG
LOC_Os10g07050
OsAffx.20723.1.S1_x_at--895--3971Chr10:3685973..3685997 (25 bp)
CGTGGACGGTTGCTGTGGCGGGCAC
LOC_Os10g07050
OsAffx.20723.1.S1_x_at--268--6131Chr10:3685905..3685929 (25 bp)
GAGGGCGGAAGAGCTCCTCCTCTCG
LOC_Os10g07050
OsAffx.20723.1.S1_x_at--821--631Chr10:3685814..3685838 (25 bp)
ATGCATCCGCCATCGAGACGAGGAC
LOC_Os10g07050
OsAffx.20723.1.S1_x_at--366--4431Chr10:3685806..3685830 (25 bp)
GCCATCGAGACGAGGACAACAAGAT
LOC_Os10g07050
Target Sequence 
ATGAGGAGGCACTAGCAAGCAGCGAGAGGATGAGGCCGCTGCCGGCAAGGATAGTCGAAACATGGGGAGCGGGAGCGGCC
GCGGCCGCCTCCGGCGAGGATGTTTGCGGGGAGGTTACGGAGGTCGCGGAGGGGAGTGGCCGTCGCCGAGAACGGTCGCG
GAGGCGGGTGCGAGCACAGCCGTCGGCGGCGAGGACGCTCGCGGGGAGGTCGTGGAGGTCACCGAGAGGCGCGGGGAGCG
GGCGCGGCTGCTACCGGCGAGGAGGCTCGCGGGAAGGTCGCAGAGGGGCACGGGGAGCGAGTGCGGCCGCTGCCGTGGAC
GGTTGCTGTGGCGGGCACGGGCGCAGCCGCCGCCGGCGAGGACAGTCACGGAGGGCGCGGGGAGGGCGGAAGAGCTCCTC
CTCTCGCCGCTCCTTCCCATCCGCCGCTGTGCTGCCCTCCTCCGGCACCGTGCTACCGTCCTCCAGCTGCCCATGCATCC
GCCATCGAGACGAGGACAACAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20723.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis