Browse Element(s) Details


OsAffx.27863.1.S1_at

Description tigr:9634.m02822
TID=OsAffx.27863.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2945011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g29430Os.50296.1.S1_at11/116+16851006..16857767Cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed
LOC_Os06g29440Os.56255.1.S1_x_at2/116+16861023..16863324expressed protein
LOC_Os06g29440OsAffx.23361.2.S1_x_at1/116+16861023..16863324expressed protein
LOC_Os06g29450OsAffx.27863.1.S1_at11/116+16876332..16877693expressed protein
LOC_Os06g29460Os.54531.1.S1_at11/116+16878621..16880671hypothetical protein
LOC_Os06g29470Os.27789.1.A1_at2/116+16895518..16896664Peroxidase 1 precursor, putative, expressed
LOC_Os06g29480OsAffx.26961.1.S1_x_at1/116+16901951..16902985Transposable element protein, putative, Retrotrans_gag

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27863.1.S1_at--32--6251Chr06:16877171..16877195 (25 bp)
GATGGAACTCACTAGGCCAGCTATA
LOC_Os06g29450
OsAffx.27863.1.S1_at--73--471Chr06:16877208..16877232 (25 bp)
ATCTCTGGGCCTGATGATCCTGAAG
LOC_Os06g29450
OsAffx.27863.1.S1_at--333--5371Chr06:16877232..16877256 (25 bp)
GAAGAATGTTCATACTCCCTGGTCC
LOC_Os06g29450
OsAffx.27863.1.S1_at--814--4451Chr06:16877288..16877312 (25 bp)
GCCTATCCCTGCCAATTCATGGAAT
LOC_Os06g29450
OsAffx.27863.1.S1_at--1147--671Chr06:16877311..16877335 (25 bp)
ATGACTGGAAGTACGGCTGCACGAT
LOC_Os06g29450
OsAffx.27863.1.S1_at--17--5111Chr06:16877329..16877353 (25 bp)
GCACGATCAGTTCGGACCATGTGAA
LOC_Os06g29450
OsAffx.27863.1.S1_at--307--5411Chr06:16877351..16877375 (25 bp)
GAAGCTCCCTGATGACGGCACGAAG
LOC_Os06g29450
OsAffx.27863.1.S1_at--967--3031Chr06:16877377..16877401 (25 bp)
AATCCGAGTTGCTGCGTAGGCTTGT
LOC_Os06g29450
OsAffx.27863.1.S1_at--729--10811Chr06:16877451..16877475 (25 bp)
TTGTCCTTGGGATGCCTGCGAATGG
LOC_Os06g29450
OsAffx.27863.1.S1_at--558--4051Chr06:16877507..16877531 (25 bp)
CGATGTTATTTACCTCTTGTCCAAG
LOC_Os06g29450
OsAffx.27863.1.S1_at--857--1471Chr06:16877620..16877644 (25 bp)
AGAATATCAATTTCCTGCGCTGCTG
LOC_Os06g29450
Target Sequence 
GATGGAACTCACTAGGCCAGCTATAGAGGAGGAGATCATCTCTGGGCCTGATGATCCTGAAGAAGAATGTTCATACTCCC
TGGTCCCTGGTAGATGGCAGGCCACCACCTGGACCATGCCTATCCCTGCCAATTCATGGAATGACTGGAAGTACGGCTGC
ACGATCAGTTCGGACCATGTGAAGCTCCCTGATGACGGCACGAAGCAATCCGAGTTGCTGCGTAGGCTTGTGATGAGTAG
GAATGAGAGGAAGGAGGAGGTTGCAGTTGCAGGGCTGTGCTTGTCCTTGGGATGCCTGCGAATGGCTCACCCCACGCTGA
GCATCGCGGATGGTGACGATGTTATTTACCTCTTGTCCAAGGGCATCCGCGGGGCAAAGATGGCTGCTGTGGTCGCTGTT
GATGTGAGGGCGAGGACTCTGATAGGAGTGTCAGAGATTGATAGCGAGAAGAATATCAATTTCCTGCGCTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27863.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis