Browse Element(s) Details


Os.50296.1.S1_at

Description gb:AK120595.1
DB_XREF= gi:37990218
TID=Os.50296.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50296 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013147K17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013147K17, full insert sequence.
FL= gb:AK120595.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2943011/11Cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g29400Os.23980.1.S1_at11/116+16824603..16835196Surp module family protein, expressed
LOC_Os06g29410Os.26886.2.S1_s_at8/116+16838620..16841708transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g29410Os.26886.6.S1_s_at7/116+16838620..16841708transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g29410OsAffx.16467.1.S1_at4/116+16838620..16841708transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g29420Os.26886.3.S1_x_at5/116+16844568..16847921transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g29420Os.26886.1.S1_x_at5/116+16844568..16847921transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g29430Os.50296.1.S1_at11/116+16851006..16857767Cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed
LOC_Os06g29440Os.56255.1.S1_x_at2/116+16861023..16863324expressed protein
LOC_Os06g29440OsAffx.23361.2.S1_x_at1/116+16861023..16863324expressed protein
LOC_Os06g29450OsAffx.27863.1.S1_at11/116+16876332..16877693expressed protein
LOC_Os06g29460Os.54531.1.S1_at11/116+16878621..16880671hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008270molecular_functionzinc ion binding
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50296.1.S1_at--695--2191Chr06:16855508..16855532 (25 bp)
ACAAACTTAAGACATGGCGCCTGGC
LOC_Os06g29430
Os.50296.1.S1_at--210--8411Chr06:16855523..16855983 (25 bp)
GGCGCCTGGCGGATACAACATTGTA
LOC_Os06g29430
Os.50296.1.S1_at--467--10111Chr06:16855982..16856006 (25 bp)
TATGTAACCCTGGAGCCTTGTGCCA
LOC_Os06g29430
Os.50296.1.S1_at--835--771Chr06:16856006..16856030 (25 bp)
ATGTGCGCTGGTGCTATTCTTCAAG
LOC_Os06g29430
Os.50296.1.S1_at--974--7611Chr06:16856053..16856077 (25 bp)
GGGAGCCCCAAACAAGCTTCTTGGA
LOC_Os06g29430
Os.50296.1.S1_at--953--6231Chr06:16856081..16856156 (25 bp)
GATGGCAGCTGGGTTAGGCTTTTCC
LOC_Os06g29430
Os.50296.1.S1_at--215--4891Chr06:16857155..16857179 (25 bp)
GCTTTTCCCCGGTGATGGTCAAACA
LOC_Os06g29430
Os.50296.1.S1_at--54--5351Chr06:16857239..16857263 (25 bp)
GAAGATATCCATAAGGCGCGGCATT
LOC_Os06g29430
Os.50296.1.S1_at--1050--2871Chr06:16857355..16857379 (25 bp)
AAGGGCGCAACCATCCAGTCAAGTT
LOC_Os06g29430
Os.50296.1.S1_at--255--9551Chr06:16857437..16857461 (25 bp)
TCTATTTTTCTCTGCTCGGAGTTAC
LOC_Os06g29430
Os.50296.1.S1_at--543--10751Chr06:16857567..16857591 (25 bp)
TTGAGCCGAGGAAACTACCATCAGT
LOC_Os06g29430
Target Sequence 
ACAAACTTAAGACATGGCGCCTGGCGGATACAACATTGTATGTAACCCTGGAGCCTTGTGCCATGTGCGCTGGTGCTATT
CTTCAAGCTAGAGTTGATACGGTGGTATGGGGAGCCCCAAACAAGCTTCTTGGAGCTGATGGCAGCTGGGTTAGGCTTTT
CCCCGGTGATGGTCAAACAAGCAGTTTGGATTCAGCAAACACAAACCAGGGGGCTGGACCTGTCCACCCTTTCCATCCGA
AGATATCCATAAGGCGCGGCATTCTCTCCGCTGAGTGCTCAGAAATAATGCAGCAATTCTTCCATTTGAGGAGGAAGAAA
CAGAAGCCGGAGTCGCCACCTCATGCGCACCCCCAAGGGCGCAACCATCCAGTCAAGTTCTTCAGTAAGATGCATCACAT
GTTTGGCACAATCTTCTGTTTGTAGTAACATTTCCTTCTATTTTTCTCTGCTCGGAGTTACATTTCTTCCGTTGATTCAG
TCCCCTTTCTTGTGTATTTCCCTATGTGTATGCCCCCCTTTTCTCCCCTGCTTTGGGTTATTCTGTAATGTTAGATTGGA
GGTAATTTGAGCCGAGGAAACTACCATCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50296.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis