Browse Element(s) Details


Os.23980.1.S1_at

Description gb:AK103574.1
DB_XREF= gi:32988783
TID=Os.23980.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23980 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033132P04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033132P04, full insert sequence.
FL= gb:AK103574.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2940011/11Surp module family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g29390OsAffx.15661.1.S1_at11/116+16809193..16809438hypothetical protein
LOC_Os06g29400Os.23980.1.S1_at11/116+16824603..16835196Surp module family protein, expressed
LOC_Os06g29410Os.26886.2.S1_s_at8/116+16838620..16841708transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g29410Os.26886.6.S1_s_at7/116+16838620..16841708transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g29410OsAffx.16467.1.S1_at4/116+16838620..16841708transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g29420Os.26886.3.S1_x_at5/116+16844568..16847921transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g29420Os.26886.1.S1_x_at5/116+16844568..16847921transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g29430Os.50296.1.S1_at11/116+16851006..16857767Cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0007275biological_processdevelopment
GO:0010087biological_processvascular tissue development (sensu Tracheophyta)
GO:0005634cellular_componentnucleus
GO:0003723molecular_functionRNA binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23980.1.S1_at--720--3791Chr06:16825177..16825201 (25 bp)
CTCGCAATCCTGATACTGATTCTAG
LOC_Os06g29400
Os.23980.1.S1_at--719--3411Chr06:16825089..16825113 (25 bp)
CAGAAGGCGTTCTAGACACCACAAA
LOC_Os06g29400
Os.23980.1.S1_at--726--2311Chr06:16825055..16825079 (25 bp)
AAAGATTCCACAAAGCATTCATTAG
LOC_Os06g29400
Os.23980.1.S1_at--896--7831Chr06:16824966..16824990 (25 bp)
GGTAAACTATTTCAGGACACACATA
LOC_Os06g29400
Os.23980.1.S1_at--162--2191Chr06:16824948..16824972 (25 bp)
ACACATATGGTGACTGTTGAGGCAG
LOC_Os06g29400
Os.23980.1.S1_at--621--151Chr06:16824886..16824910 (25 bp)
ATTAGTTTGCTGTCCTGTAATCCTT
LOC_Os06g29400
Os.23980.1.S1_at--133--7251Chr06:16824875..16824899 (25 bp)
GTCCTGTAATCCTTGGGTGCAACCA
LOC_Os06g29400
Os.23980.1.S1_at--270--5191Chr06:16824837..16824861 (25 bp)
GCAATGTACTGCATAGTGCCCCATG
LOC_Os06g29400
Os.23980.1.S1_at--211--291Chr06:16824825..16824849 (25 bp)
ATAGTGCCCCATGTTCACAACATTT
LOC_Os06g29400
Os.23980.1.S1_at--123--7971Chr06:16824743..16824767 (25 bp)
GGATCTTCTCTCTATTAATCTACAG
LOC_Os06g29400
Os.23980.1.S1_at--749--10791Chr06:16824690..16824714 (25 bp)
TTGTAACCGCCCTATTTATGTAACA
LOC_Os06g29400
Target Sequence 
CTCGCAATCCTGATACTGATTCTAGTGATCATGAATATGAGGAAAGACATAAATCCAGTAGTCGAAGATCATCTGATAAA
GACAGATCCAGAAGGCGTTCTAGACACCACAAACGTTGAGGAAAAGATTCCACAAAGCATTCATTAGTGATAGCTACAAG
AAGTTTTGAGGGAAAAATCAGTGAAGAGAAATCCCCAATCAAGGAAATTCTGGTAAACTATTTCAGGACACACATATGGT
GACTGTTGAGGCAGATATTCTTATTAAGTGCTTTACACAATTTTTNTTCTTAATTAGTTTGCTGTCCTGTAATCCTTGGG
TGCAACCATTTTTTCTTTTCTGCAATGTACTGCATAGTGCCCCATGTTCACAACATTTAATTGAGTCAGTGGGTTCTGTA
CATACATGNGCAATCATAGACTATTAGACATACTNGGATCTTCTCTCTATTAATCTACAGGATGTAGTGTTGCTGCAGTT
AGTAGGATTTGTAACCGCCCTATTTATGTAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23980.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis