Browse Element(s) Details

Os.24109.1.A1_at

Description

gb:CA761229
DB_XREF= gi:25805268
DB_XREF=BR060003B20C03.ab1
CLONE=BR060003B20C03.ab1
TID=Os.24109.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.24109 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os02g22290	3/11	retrotransposon protein, putative, Ty3-gypsy subclass, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os02g22280	OsAffx.24382.1.S1_x_at	11/11	2	+	13304016..13315739	expressed protein
LOC_Os02g22280	Os.27910.1.S1_at	2/11	2	+	13304016..13315739	expressed protein
LOC_Os02g22290	Os.54651.1.S1_at	3/11	2	+	13318079..13323006	retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g22290	Os.24109.1.A1_at	3/11	2	+	13318079..13323006	retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g22290	Os.52750.1.S1_x_at	1/11	2	+	13318079..13323006	retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g22290	OsAffx.3902.1.S1_at	1/11	2	+	13318079..13323006	retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g22300	NA	NA	2	+	13323985..13324752	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22310	NA	NA	2	+	13328857..13329423	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22320	NA	NA	2	+	13330812..13331648	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22330	OsAffx.24383.1.S1_at	11/11	2	+	13332384..13333320	hypothetical protein
LOC_Os02g22340	OsAffx.12157.1.S1_at	11/11	2	+	13334765..13335037	pol, putative
LOC_Os02g22350	OsAffx.24384.1.S1_at	10/11	2	+	13337395..13340367	hypothetical protein
LOC_Os02g22350	Os.54531.1.S1_at	1/11	2	+	13337395..13340367	hypothetical protein
LOC_Os02g22360	NA	NA	2	+	13342290..13342925	retrotransposon protein, putative, unclassified

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.24109.1.A1_at--338--219	1	NONE	ACAAGAACCCAATCCCCGTTGAGAT	NONE
Os.24109.1.A1_at--847--181	1	NONE	ACCCAATCCCCGTTGAGATTGAGTT	NONE
Os.24109.1.A1_at--1146--53	1	NONE	ATCCCCGTTGAGATTGAGTTAGTTT	NONE
Os.24109.1.A1_at--1115--923	1	NONE	TCCTTTGGGCCAATGCGTGTTTCTT	NONE
Os.24109.1.A1_at--515--61	1	Chr02:13318510..13318806 (25 bp)	ATGCGTGTTTCTTGGTATTTTTCTC	LOC_Os02g22290
Os.24109.1.A1_at--232--787	1	NONE	GGTATTTTTCTCTATATTGTTCGTT	NONE
Os.24109.1.A1_at--125--1039	1	NONE	TTTTCTCTATATTGTTCGTTTCTTT	NONE
Os.24109.1.A1_at--210--1037	1	NONE	TTCTTTTTTGGGTGGAGGGAATCAT	NONE
Os.24109.1.A1_at--761--281	3	Chr02:13318585..13318677 (25 bp)	AAGATTTGCATCTTTACCATTTGCA	LOC_Os02g22290
Os.24109.1.A1_at--675--355	1	NONE	CATCTTTACCATTTGCATGCGTGGG	NONE
Os.24109.1.A1_at--154--61	1	Chr02:13318609..13318633 (25 bp)	ATGCGTGGGGCATTTGTTCGTTTCT	LOC_Os02g22290

Target Sequence

ACAAGAACCCAATCCCCGTTGAGATTGAGTTAGTTTTCCCCCCTCCTTTGGGCCAATGCGTGTTTCTTGGTATTTTTCTC
TATATTGTTCGTTTCTTTTTTGGGTGGAGGGAATCATGGAAATGGAAATAAAGATTTGCATCTTTACCATTTGCATGCGT
GGGGCATTTGTTCGTTTCT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis