Browse Element(s) Details


Os.52750.1.S1_x_at

Description gb:AK069069.1
DB_XREF= gi:32979093
TID=Os.52750.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52750 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023009A21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023009A21, full insert sequence.
FL= gb:AK069069.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g031909/11expressed protein
LOC_Os05g171502/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g222901/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g03160NANA9+1509792..1513205transposon protein, putative, Mutator sub-class
LOC_Os09g03170NANA9+1519973..1521792hypothetical protein
LOC_Os09g03180Os.41695.5.S1_x_at4/119+1523380..1528700transposon protein, putative, Mutator sub-class
LOC_Os09g03180Os.41695.3.S1_x_at1/119+1523380..1528700transposon protein, putative, Mutator sub-class
LOC_Os09g03180Os.46610.1.A1_x_at1/119+1523380..1528700transposon protein, putative, Mutator sub-class
LOC_Os09g03180OsAffx.21269.1.S1_x_at1/119+1523380..1528700transposon protein, putative, Mutator sub-class
LOC_Os09g03190Os.52750.1.S1_x_at9/119+1534607..1537149expressed protein
LOC_Os09g03190Os.54651.1.S1_at9/119+1534607..1537149expressed protein
LOC_Os09g03190OsAffx.30326.1.S1_x_at2/119+1534607..1537149expressed protein
LOC_Os09g03200OsAffx.19310.1.S1_at3/119+1538971..1539198hypothetical protein
LOC_Os09g03210OsAffx.6161.1.S1_s_at11/119+1545465..1548527expressed protein
LOC_Os09g03210OsAffx.6161.1.S1_x_at10/119+1545465..1548527expressed protein
LOC_Os09g03210OsAffx.26683.1.S1_x_at3/119+1545465..1548527expressed protein
LOC_Os09g03220NANA9+1553844..1555485hypothetical protein
LOC_Os09g03230NANA9+1557404..1559533hypothetical protein
LOC_Os09g03240OsAffx.21269.1.S1_x_at1/119+1561306..1561719retrotransposon protein, putative, unclassified
LOC_Os09g03250NANA9+1561898..1562991retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52750.1.S1_x_at--790--4271Chr09:1536653..1536677 (25 bp)
CCTCCGTGGAGCATGACGACCGCGG
LOC_Os09g03190
Os.52750.1.S1_x_at--926--8171Chr09:1536092..1536116 (25 bp)
GGAAGATCGGCTCTTCATCGCCGTC
LOC_Os09g03190
Os.52750.1.S1_x_at--953--8671NONE
TGTGAGTGATCAAGAGGATGGACCT
NONE
Os.52750.1.S1_x_at--1070--2799Chr11:12418555..12418579 (25 bp)
AAGATGAAGGCTTGGATCTCTAGTT
NONE
Os.52750.1.S1_x_at--655--1171Chr09:1534594..1534618 (25 bp)
AGTACTTCCTTTACACTTCCGCAAG
NONE
Os.52750.1.S1_x_at--930--2051Chr09:1534717..1534741 (25 bp)
ACTTCCGCAAGTGTGGCTAGTTCAC
LOC_Os09g03190
Os.52750.1.S1_x_at--203--2871Chr09:1534709..1534733 (25 bp)
AAGTGTGGCTAGTTCACTCCGCCGT
LOC_Os09g03190
Os.52750.1.S1_x_at--172--8499Chr11:12418601..12418625 (25 bp)
TGGCTGCTGCTGTTCCGTAGTCTTC
NONE
Os.52750.1.S1_x_at--217--71510Chr05:16336341..16336365 (25 bp)
GTCTTCCGCTGTTTTATTTGTTTAT
NONE
Os.52750.1.S1_x_at--81--6832Chr09:1534636..1534660 (25 bp)
GTTTATCTTTGAGTGCGAGGGCTTG
LOC_Os09g03190
Os.52750.1.S1_x_at--710--6132Chr09:1534620..1534644 (25 bp)
GAGGGCTTGAGTCGTCCATGTAATA
LOC_Os09g03190
Target Sequence 
CCTCCGTGGAGCATGACGACCGCGGGAACGACGACGACACCGACGACCCGAAGTTCCTCGCCGTTTCTTCCTCACTGCCG
ACAACACCGTCGATCTCTCGCCGCCGTGTCTGCTCGATCCTGCCGTTCCGGAAGATCGGCTCTTCATCGCCGTCGACGTC
GAAGACTTTGTGAGTGATCAAGAGGATGGACCTGAGGAAGATGAAGGCTTGGATCTCTAGTTCACTCCGCCGTCGAGTGC
CTGTGGCTGCTGCTGTTCCGTAGTCTTCCGCTGTTTTATTTGTTTATCTTTGAGTGCGAGGGCTTGAGTCGTCCATGTAA
TAAAGTACTTCCTTTACACTTCCGCAAGTGTGGCTAGTTCACTCCGCCGTCGAGTGCCTGTGGCTGCTGCTGTTCCGTAG
TCTTCCGCTGTTTTATTTGTTTATCTTTGAGTGCGAGGGCTTGAGTCGTCCATGTAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52750.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis