Browse Element(s) Details


Os.54651.1.S1_at

Description gb:AK106378.1
DB_XREF= gi:32991587
TID=Os.54651.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54651 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-102-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-D08, full insert sequence.
FL= gb:AK106378.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g031909/11expressed protein
LOC_Os02g222903/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g171501/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g03160NANA9+1509792..1513205transposon protein, putative, Mutator sub-class
LOC_Os09g03170NANA9+1519973..1521792hypothetical protein
LOC_Os09g03180Os.41695.5.S1_x_at4/119+1523380..1528700transposon protein, putative, Mutator sub-class
LOC_Os09g03180Os.41695.3.S1_x_at1/119+1523380..1528700transposon protein, putative, Mutator sub-class
LOC_Os09g03180Os.46610.1.A1_x_at1/119+1523380..1528700transposon protein, putative, Mutator sub-class
LOC_Os09g03180OsAffx.21269.1.S1_x_at1/119+1523380..1528700transposon protein, putative, Mutator sub-class
LOC_Os09g03190Os.52750.1.S1_x_at9/119+1534607..1537149expressed protein
LOC_Os09g03190Os.54651.1.S1_at9/119+1534607..1537149expressed protein
LOC_Os09g03190OsAffx.30326.1.S1_x_at2/119+1534607..1537149expressed protein
LOC_Os09g03200OsAffx.19310.1.S1_at3/119+1538971..1539198hypothetical protein
LOC_Os09g03210OsAffx.6161.1.S1_s_at11/119+1545465..1548527expressed protein
LOC_Os09g03210OsAffx.6161.1.S1_x_at10/119+1545465..1548527expressed protein
LOC_Os09g03210OsAffx.26683.1.S1_x_at3/119+1545465..1548527expressed protein
LOC_Os09g03220NANA9+1553844..1555485hypothetical protein
LOC_Os09g03230NANA9+1557404..1559533hypothetical protein
LOC_Os09g03240OsAffx.21269.1.S1_x_at1/119+1561306..1561719retrotransposon protein, putative, unclassified
LOC_Os09g03250NANA9+1561898..1562991retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54651.1.S1_at--568--5013Chr02:13321681..13321705 (25 bp)
GCAGGCTCATGCGACCTTGGTGATA
LOC_Os02g22290
Os.54651.1.S1_at--582--9152Chr09:1535084..1535108 (25 bp)
TGCGACCTTGGTGATATTATAATAT
LOC_Os09g03190
Os.54651.1.S1_at--1043--11Chr09:1535061..1535085 (25 bp)
ATTGGCTTAGAATAGGATCGTGTTT
LOC_Os09g03190
Os.54651.1.S1_at--98--1011Chr09:1535048..1535072 (25 bp)
AGGATCGTGTTTTAAAATGTGCTTT
LOC_Os09g03190
Os.54651.1.S1_at--257--717Chr05:16336138..16336162 (25 bp)
ATGTTTAAACTATGGCTTTATGCAA
NONE
Os.54651.1.S1_at--450--98310Chr11:12418429..12418453 (25 bp)
TAAACCCTATTAGGCCATTTCCTTG
NONE
Os.54651.1.S1_at--979--10197Chr05:9812653..9812673 (21 bp)
TATTAGGCCATTTCCTTGTTTCTCC
NONE
Os.54651.1.S1_at--1054--8772Chr09:1534961..1534985 (25 bp)
TGTTTCTCCCTATGCATTATTGTTG
LOC_Os09g03190
Os.54651.1.S1_at--599--70113Chr11:12418509..12418533 (25 bp)
GTACTCACTCTTGCTCACAAAAATA
NONE
Os.54651.1.S1_at--357--2233Chr08:12448821..12449086 (25 bp)
ACAATGTCTATGTGTACCTTGCCTC
NONE
Os.54651.1.S1_at--454--40514Chr11:12418755..12418779 (25 bp)
CGAGGATTAATGCACTGAGCGTTTG
NONE
Target Sequence 
GCAGGCTCATGCGACCTTGGTGATATTATAATATTGGCTTAGAATAGGATCGTGTTTTAAAATGTGCTTTAACCTGATTA
AAATGTTTAAACTATGGCTTTATGCAAAATAAACCCTATTAGGCCATTTCCTTGTTTCTCCCTATGCATTATTGTTGCAT
TTCTGGTGTGACTTGCTGAGTACGGTGGTGGTACTCACTCTTGCTCACAAAAATAATCCAGAGGATGGACCTGAGGAAGA
TGAAGGCTTGGATCTCTAGTTCACTCCGCCGTCGAGTGCCTGTGGCTGCTGCTGTTCCGTAGTCTTCCGCTGTTTTATTT
GTTTATCTTTGAGTGCGAGGGCTTGAGTCGTCCATGTAATAAAGTACTTCCTTTACACTTCCGCAAGTGTGGCTAGTTCA
CTCCGCCGTCGAGTGCCTGTGGCTGCTGCTGTTCCGTAGTCTTCCGCTGTTTTATTTGTTTATCTTTGAGTGCGAGGGCT
TGAGTCGTCCATGTAATAAAGTACTTCCTTTACACTTCCGCAAGTGTGGCTTGTAATAATCAACAATGTCTATGTGTACC
TTGCCTCCTGGGACGAGGATTAATGCACTGAGCGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54651.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis