Browse Element(s) Details


OsAffx.19310.1.S1_at

Description tigr:9639.m03816
TID=OsAffx.19310.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4151010/11hypothetical protein
LOC_Os09g032003/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41470OsAffx.10632.1.S1_at1/1111+24372641..24375671retrotransposon protein, putative, unclassified
LOC_Os11g41480OsAffx.19306.1.S1_at1/1111+24378500..24384390retrotransposon protein, putative, unclassified
LOC_Os11g41490OsAffx.19308.1.S1_at11/1111+24385207..24388322hypothetical protein
LOC_Os11g41500OsAffx.19309.1.S1_at11/1111+24391449..24392144NC domain-containing protein, putative
LOC_Os11g41510OsAffx.19310.1.S1_at10/1111+24397247..24398072hypothetical protein
LOC_Os11g41520OsAffx.31430.1.S1_at11/1111+24398613..24401668hypothetical protein
LOC_Os11g41530OsAffx.4205.2.A1_at10/1111+24405548..24406707expressed protein
LOC_Os11g41540Os.49385.1.S1_at11/1111+24410147..24415690NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19310.1.S1_at--662--8491Chr11:24398016..24398040 (25 bp)
TGGCATCAGGGTTCTCGACACTAAA
LOC_Os11g41510
OsAffx.19310.1.S1_at--743--9432Chr09:1538059..1538447 (25 bp)
TCAGGGTTCTCGACACTAAAATAAA
NONE
OsAffx.19310.1.S1_at--42--8151Chr11:24397979..24398001 (23 bp)
GGACAGAATTTTGACCATGCAAGAG
LOC_Os11g41510
OsAffx.19310.1.S1_at--45--10771NONE
TTGACCATGCAAGAGCACCGAACTA
NONE
OsAffx.19310.1.S1_at--1037--5931Chr11:24397561..24397585 (25 bp)
GAGCACCGAACTAAAGTAGCCAGCA
LOC_Os11g41510
OsAffx.19310.1.S1_at--28--1351Chr11:24397518..24397542 (25 bp)
AGAGTACCTGGTTTGCACGATGCGC
LOC_Os11g41510
OsAffx.19310.1.S1_at--93--8591Chr11:24397510..24397534 (25 bp)
TGGTTTGCACGATGCGCTTCACTAC
LOC_Os11g41510
OsAffx.19310.1.S1_at--147--611Chr11:24397499..24397523 (25 bp)
ATGCGCTTCACTACTCAGCCTAGCG
LOC_Os11g41510
OsAffx.19310.1.S1_at--1059--1872Chr09:1539017..1539041 (25 bp)
ACGAGGAAGACCTTGTGCTCACCGT
LOC_Os09g03200
OsAffx.19310.1.S1_at--827--4532Chr09:1539043..1539067 (25 bp)
GCCCCTCTCCGCTCGGTGGATGAGT
LOC_Os09g03200
OsAffx.19310.1.S1_at--135--4612Chr09:1539164..1539188 (25 bp)
GCGACTCCCGATTTCAAACAGTGAA
LOC_Os09g03200
Target Sequence 
TGGCATCAGGGTTCTCGACACTAAAATAAAAAAAATCATGGACAGAATTTTGACCATGCAAGAGCACCGAACTAAAGTAG
CCAGCAGAAGAGCTCAAAGAGATGAGAGTACCTGGTTTGCACGATGCGCTTCACTACTCAGCCTAGCGCTCGCCATNGTC
GTCGCCCCNGCTAGATCTCNCCTCAAGCCTGGTGACAACAACGAGGAAGACCTTGTGCTCACCGTNGCCCCTCTCCGCTC
GGTGGATGAGTCGCNGTCGCCNCCGCAGAAGCCAGCNGTCGCCGACACCGTCGCCGTCGAGGGATTTGGGGGAGAANCCG
CAGCCTCTGCTTCTCTCTCTCNNAGACGCGACTCCCGATTTCAAACAGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19310.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis