Browse Element(s) Details


OsAffx.19308.1.S1_at

Description tigr:9639.m03814
TID=OsAffx.19308.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4149011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41430OsAffx.19305.1.S1_at11/1111+24358800..24361953hypothetical protein
LOC_Os11g41430OsAffx.4345.1.S1_at1/1111+24358800..24361953hypothetical protein
LOC_Os11g41440NANA11+24363511..24363999hypothetical protein
LOC_Os11g41450OsAffx.19306.1.S1_at10/1111+24367267..24368870hypothetical protein
LOC_Os11g41460NANA11+24369785..24371791hypothetical protein
LOC_Os11g41470OsAffx.10632.1.S1_at1/1111+24372641..24375671retrotransposon protein, putative, unclassified
LOC_Os11g41480OsAffx.19306.1.S1_at1/1111+24378500..24384390retrotransposon protein, putative, unclassified
LOC_Os11g41490OsAffx.19308.1.S1_at11/1111+24385207..24388322hypothetical protein
LOC_Os11g41500OsAffx.19309.1.S1_at11/1111+24391449..24392144NC domain-containing protein, putative
LOC_Os11g41510OsAffx.19310.1.S1_at10/1111+24397247..24398072hypothetical protein
LOC_Os11g41520OsAffx.31430.1.S1_at11/1111+24398613..24401668hypothetical protein
LOC_Os11g41530OsAffx.4205.2.A1_at10/1111+24405548..24406707expressed protein
LOC_Os11g41540Os.49385.1.S1_at11/1111+24410147..24415690NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19308.1.S1_at--1023--6151Chr11:24385764..24385788 (25 bp)
GAGGAAACCTCCAGCAAAGCCCAAG
LOC_Os11g41490
OsAffx.19308.1.S1_at--360--2331Chr11:24385707..24385731 (25 bp)
AAAGATATAGCTCATCGGCTCGAAA
LOC_Os11g41490
OsAffx.19308.1.S1_at--1074--3931Chr11:24385692..24385716 (25 bp)
CGGCTCGAAAGCTCTCTAGATGCAT
LOC_Os11g41490
OsAffx.19308.1.S1_at--766--611Chr11:24385673..24385697 (25 bp)
ATGCATTGGTTGTCGACTATGGTCC
LOC_Os11g41490
OsAffx.19308.1.S1_at--29--2811Chr11:24385622..24385646 (25 bp)
AAGATCAGATTCCAGATATCACAGC
LOC_Os11g41490
OsAffx.19308.1.S1_at--773--2651Chr11:24385595..24385619 (25 bp)
AAGCCATCTCTCCAGTAGTTTTTCT
LOC_Os11g41490
OsAffx.19308.1.S1_at--695--4391Chr11:24385429..24385453 (25 bp)
GCCAAGTTCTATCCAGGTCAACATA
LOC_Os11g41490
OsAffx.19308.1.S1_at--1146--5891Chr11:24385380..24385404 (25 bp)
GAGCTGCTTGCTGAATTCGAGGCTT
LOC_Os11g41490
OsAffx.19308.1.S1_at--552--10611Chr11:24385365..24385389 (25 bp)
TTCGAGGCTTGCAACGCTGAATTAG
LOC_Os11g41490
OsAffx.19308.1.S1_at--644--931Chr11:24385334..24385358 (25 bp)
AGGAACATATACTTGCCGATCTCCC
LOC_Os11g41490
OsAffx.19308.1.S1_at--579--2711Chr11:24385266..24385290 (25 bp)
AAGCATCTAGCCGACATGAGCAAGT
LOC_Os11g41490
Target Sequence 
GAGGAAACCTCCAGCAAAGCCCAAGCTCCTCTAGCCGATGACTTGAAAACTATTCTCAAAGATATAGCTCATCGGCTCGA
AAGCTCTCTAGATGCATTGGTTGTCGACTATGGTCCAATAAGAGCTAGATTTGGAGAAATCCAAGATCAGATTCCAGATA
TCACAGCCGAAGCCATCTCTCCAGTAGTTTTTCTTGAGCAATATCGGTTCAAACTGGAGAGAGAAAGACAAAGGATAGCC
GATCGGCGAGAGCGAAAAGAACTTGAAGCCACCATCCAAGTCAATCGGCAATCGATTAACGAAGAAAAAGCTAAACTTGA
TGGAATGATCTCTGGGCCAAGTTCTATCCAGGTCAACATAGATCGGCTAAAGAATCGCAAGATTGAGCTGCTTGCTGAAT
TCGAGGCTTGCAACGCTGAATTAGCTTTAGAGGAACATATACTTGCCGATCTCCCAAAAGCCATCGAAGAACATAAGTCC
AAGTTAAAATCCCCCATCAAGCATCTAGCCGACATGAGCAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19308.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis