Browse Element(s) Details


Os.49385.1.S1_at

Description gb:AK066215.1
DB_XREF= gi:32976233
TID=Os.49385.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49385 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013055N19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013055N19, full insert sequence.
FL= gb:AK066215.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4154011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41490OsAffx.19308.1.S1_at11/1111+24385207..24388322hypothetical protein
LOC_Os11g41500OsAffx.19309.1.S1_at11/1111+24391449..24392144NC domain-containing protein, putative
LOC_Os11g41510OsAffx.19310.1.S1_at10/1111+24397247..24398072hypothetical protein
LOC_Os11g41520OsAffx.31430.1.S1_at11/1111+24398613..24401668hypothetical protein
LOC_Os11g41530OsAffx.4205.2.A1_at10/1111+24405548..24406707expressed protein
LOC_Os11g41540Os.49385.1.S1_at11/1111+24410147..24415690NB-ARC domain containing protein, expressed
LOC_Os11g41550Os.21626.1.S1_s_at11/1111+24427653..24429994expressed protein
LOC_Os11g41550OsAffx.31431.1.S1_at11/1111+24427653..24429994expressed protein
LOC_Os11g41560Os.53761.1.S1_at11/1111+24431187..24433786F-box domain containing protein, expressed
LOC_Os11g41570OsAffx.31432.1.S1_at11/1111+24435433..24438560F-box domain containing protein
LOC_Os11g41580NANA11+24440112..24441438transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49385.1.S1_at--378--2972Chr11:24414686..24414710 (25 bp)
AATGTCCTGCTCTGCCCAAGGGTTC
LOC_Os11g41540
Os.49385.1.S1_at--405--9451Chr11:24414713..24414737 (25 bp)
TCGGCTACAGCGCTTGGATCTTTCA
LOC_Os11g41540
Os.49385.1.S1_at--820--4931Chr11:24414724..24414748 (25 bp)
GCTTGGATCTTTCAGTGTTCTACAC
LOC_Os11g41540
Os.49385.1.S1_at--562--7571Chr11:24414772..24414796 (25 bp)
GGGCGCTGCCAAGACTCTCATTTGG
LOC_Os11g41540
Os.49385.1.S1_at--128--2011Chr11:24414785..24414809 (25 bp)
ACTCTCATTTGGGTCTTCATTGGTT
LOC_Os11g41540
Os.49385.1.S1_at--14--12Chr11:24414845..24414869 (25 bp)
AACTTCCATCCCTCAAGGAACTAGT
LOC_Os11g41540
Os.49385.1.S1_at--674--5471Chr11:24414862..24414886 (25 bp)
GAACTAGTTCTGAAAGATCCCTTGA
LOC_Os11g41540
Os.49385.1.S1_at--206--5571Chr11:24414873..24414897 (25 bp)
GAAAGATCCCTTGATTTCTGAAGAT
LOC_Os11g41540
Os.49385.1.S1_at--453--5671Chr11:24414898..24414922 (25 bp)
GACATCACTTGCAAAGATCTACGAG
LOC_Os11g41540
Os.49385.1.S1_at--922--8631Chr11:24415529..24415553 (25 bp)
TGGGCTTCCTGCCTATAAGAAGGTG
LOC_Os11g41540
Os.49385.1.S1_at--478--7371Chr11:24415551..24415575 (25 bp)
GTGACATGTCATCGTTTATGAGGCA
LOC_Os11g41540
Target Sequence 
AATGTCCTGCTCTGCCCAAGGGTTCCCTCGGCTACAGCGCTTGGATCTTTCAGTGTTCTACACAGAGGAGTGGATCATTG
AAANTGGGGCGCTGCCAAGACTCTCATTTGGGTCTTCATTGGTTTGAGAATATGAGGAAGCTGCCTGATGGATTGGGGCA
ACTTCCATCCCTCAAGGAACTAGTTCTGAAAGATCCCTTGATTTCTGAAGATGACATCACTTGCAAAGATCTACGAGGGA
AAGGATGCAAGGTGACATACACCAGATACATGNTATCGGGAGGGTTTTTTTAGAGGGAGGGAGGTACANCAGATACANGN
NATCANNNGANNTACACCAGATNCANACNCNNGANAANTNGCATATTAATTGATCTGGATTTTATTTAAGGGAGGGAGGT
TTCTCCCCGTTCCTGCGAGCTATTCTNTGGGCTTCCTGCCTATAAGAAGGTGACATGTCATCGTTTATGAGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49385.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis