Browse Element(s) Details


OsAffx.4205.2.A1_at

Description tigr:9639.m03818
TID=OsAffx.4205.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4153010/11expressed protein
LOC_Os03g465602/11membrane associated salt-inducible protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41480OsAffx.19306.1.S1_at1/1111+24378500..24384390retrotransposon protein, putative, unclassified
LOC_Os11g41490OsAffx.19308.1.S1_at11/1111+24385207..24388322hypothetical protein
LOC_Os11g41500OsAffx.19309.1.S1_at11/1111+24391449..24392144NC domain-containing protein, putative
LOC_Os11g41510OsAffx.19310.1.S1_at10/1111+24397247..24398072hypothetical protein
LOC_Os11g41520OsAffx.31430.1.S1_at11/1111+24398613..24401668hypothetical protein
LOC_Os11g41530OsAffx.4205.2.A1_at10/1111+24405548..24406707expressed protein
LOC_Os11g41540Os.49385.1.S1_at11/1111+24410147..24415690NB-ARC domain containing protein, expressed
LOC_Os11g41550Os.21626.1.S1_s_at11/1111+24427653..24429994expressed protein
LOC_Os11g41550OsAffx.31431.1.S1_at11/1111+24427653..24429994expressed protein
LOC_Os11g41560Os.53761.1.S1_at11/1111+24431187..24433786F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4205.2.A1_at--992--6891Chr11:24406652..24406676 (25 bp)
GTATCAAGATGAACTCCACCGGAGC
LOC_Os11g41530
OsAffx.4205.2.A1_at--853--5451Chr11:24406642..24406666 (25 bp)
GAACTCCACCGGAGCTAGCTTTGGA
LOC_Os11g41530
OsAffx.4205.2.A1_at--1016--4852Chr11:24406629..24406653 (25 bp)
GCTAGCTTTGGAGGTTGTTCACTTT
LOC_Os11g41530
OsAffx.4205.2.A1_at--272--10771Chr11:24406615..24406639 (25 bp)
TTGTTCACTTTGCTCCCAAGGTCTT
LOC_Os11g41530
OsAffx.4205.2.A1_at--722--7972Chr11:24406572..24406596 (25 bp)
GGATCCCTCCAGATCTGCGAGTTCA
LOC_Os11g41530
OsAffx.4205.2.A1_at--474--471NONE
ATCTGCGAGTTCACAGGCGTGGCAA
NONE
OsAffx.4205.2.A1_at--328--5772Chr11:24405913..24405937 (25 bp)
GACGTAGTCCTCATCGCCGTGGAGG
LOC_Os11g41530
OsAffx.4205.2.A1_at--857--8552Chr03:26292724..26292748 (25 bp)
TGGAGGTAGTCCACGGCATCACCGT
LOC_Os03g46560
OsAffx.4205.2.A1_at--176--8173Chr03:26292833..26292857 (25 bp)
GGAACACCGTGCAGCTCCTTGTGGA
LOC_Os03g46560
OsAffx.4205.2.A1_at--1078--9411Chr11:24405737..24405761 (25 bp)
TCAGGGTAACCCATGGTCCCGGAAG
LOC_Os11g41530
OsAffx.4205.2.A1_at--761--3332Chr11:24405630..24405654 (25 bp)
CACTGCTACTGTTGTCGCTGGCTGC
LOC_Os11g41530
Target Sequence 
GTATCAAGATGAACTCCACCGGAGCTAGCTTTGGAGGTTGTTCACTTTGCTCCCAAGGTCTTCTACTGCGCCATCACTCG
GGATCCCTCCAGATCTGCGAGTTCACAGGCGTGGCAAGCTGCGGGCAGTGGCCAGTGGATCTCGCGGCCGACGTAGTCCT
CATCGCCGTGGAGGTAGTCCACGGCATCACCGTCCGCATCTCCGAGGTCCTACTCGACGTCGGCCTCGCCGTTGACCTCG
GGCACGCGCTCGACGTGGGTCTCCTCGCCGCGGAACACCGTGCAGCTCCTTGTGGACGGGCTCGTCGTCCCGGCGCCCGC
CGCCCTCAGGGTAACCCATGGTCCCGGAAGCCCCAGCCGCGCGGCGGACATCCGCGGTGGTGCTCTGCTTGGCCTCGGCC
AGCAACAGCAGCTCATCTTCCCCAACTCTCTCCACTGCTACTGTTGTCGCTGGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4205.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis