Browse Element(s) Details


OsAffx.31431.1.S1_at

Description tigr:9639.m03821
TID=OsAffx.31431.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4155011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41530OsAffx.4205.2.A1_at10/1111+24405548..24406707expressed protein
LOC_Os11g41540Os.49385.1.S1_at11/1111+24410147..24415690NB-ARC domain containing protein, expressed
LOC_Os11g41550Os.21626.1.S1_s_at11/1111+24427653..24429994expressed protein
LOC_Os11g41550OsAffx.31431.1.S1_at11/1111+24427653..24429994expressed protein
LOC_Os11g41560Os.53761.1.S1_at11/1111+24431187..24433786F-box domain containing protein, expressed
LOC_Os11g41570OsAffx.31432.1.S1_at11/1111+24435433..24438560F-box domain containing protein
LOC_Os11g41580NANA11+24440112..24441438transposon protein, putative, unclassified
LOC_Os11g41590OsAffx.19311.1.S1_at11/1111+24446932..24448320hypothetical protein
LOC_Os11g41600Os.11907.1.S1_at10/1111+24449427..24451354expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31431.1.S1_at--256--5631Chr11:24429401..24429425 (25 bp)
GACACTGATATTCCTTTAAACACAG
LOC_Os11g41550
OsAffx.31431.1.S1_at--431--51Chr11:24429410..24429434 (25 bp)
ATTCCTTTAAACACAGAGACTCTCT
LOC_Os11g41550
OsAffx.31431.1.S1_at--424--5991Chr11:24429425..24429449 (25 bp)
GAGACTCTCTCACAAAGATTTTGAT
LOC_Os11g41550
OsAffx.31431.1.S1_at--874--2811Chr11:24429439..24429463 (25 bp)
AAGATTTTGATTGGGATTCTGACAA
LOC_Os11g41550
OsAffx.31431.1.S1_at--445--1431Chr11:24429572..24429596 (25 bp)
AGAAGAATTCAAAACGGTGGCGTAT
LOC_Os11g41550
OsAffx.31431.1.S1_at--1155--2371Chr11:24429583..24429607 (25 bp)
AAACGGTGGCGTATCATTTGAATAG
LOC_Os11g41550
OsAffx.31431.1.S1_at--894--1091Chr11:24429643..24429667 (25 bp)
AGTGTTACGGCCAATACTCAACAAA
LOC_Os11g41550
OsAffx.31431.1.S1_at--267--11Chr11:24429649..24429673 (25 bp)
ACGGCCAATACTCAACAAATGGTAT
LOC_Os11g41550
OsAffx.31431.1.S1_at--693--5331Chr11:24429721..24429745 (25 bp)
GAAGACTACATTTGGATAGAGTTTA
LOC_Os11g41550
OsAffx.31431.1.S1_at--667--5431Chr11:24429758..24429782 (25 bp)
GAACCATATATTTACAGGGCTTACA
LOC_Os11g41550
OsAffx.31431.1.S1_at--850--1411Chr11:24429796..24429820 (25 bp)
AGAAACAATAATGGCGGGATCATGT
LOC_Os11g41550
Target Sequence 
GACACTGATATTCCTTTAAACACAGAGACTCTCTCACAAAGATTTTGATTGGGATTCTGACAATGATGATTTTCTTGCTA
TTGAAGTTGGTGGGGAAAAAAATGAGGGACATAATTGTGCACCCTTTGGCATCCTTGGATTTCATCCTTACAAGGAAGTT
ATTTACTTGGAAGAAGAATTCAAAACGGTGGCGTATCATTTGAATAGCTCGAAGATTCATTATCTGGGCTACTCGCGCCC
AAAGTGTTACGGCCAATACTCAACAAATGGTATAGAAGGCTCATTCGTGTACACTCCATACATGATTGGAGACCTTTAAT
GAAGACTACATTTGGATAGAGTTTATCTTAAATAACAGAACCATATATTTACAGGGCTTACAGTTGAACAGATCAAGAAA
CAATAATGGCGGGATCATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31431.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis