Browse Element(s) Details


OsAffx.19311.1.S1_at

Description tigr:9639.m03825
TID=OsAffx.19311.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4159011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41550Os.21626.1.S1_s_at11/1111+24427653..24429994expressed protein
LOC_Os11g41550OsAffx.31431.1.S1_at11/1111+24427653..24429994expressed protein
LOC_Os11g41560Os.53761.1.S1_at11/1111+24431187..24433786F-box domain containing protein, expressed
LOC_Os11g41570OsAffx.31432.1.S1_at11/1111+24435433..24438560F-box domain containing protein
LOC_Os11g41580NANA11+24440112..24441438transposon protein, putative, unclassified
LOC_Os11g41590OsAffx.19311.1.S1_at11/1111+24446932..24448320hypothetical protein
LOC_Os11g41600Os.11907.1.S1_at10/1111+24449427..24451354expressed protein
LOC_Os11g41610Os.12350.1.S1_s_at11/1111+24472318..2447405140S ribosomal protein S29, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19311.1.S1_at--927--3091Chr11:24447788..24447812 (25 bp)
AATACCATGATGACCTCAAGCCGTT
LOC_Os11g41590
OsAffx.19311.1.S1_at--507--2651Chr11:24447805..24447829 (25 bp)
AAGCCGTTCGCCAAACAATTATTGT
LOC_Os11g41590
OsAffx.19311.1.S1_at--337--171Chr11:24447855..24447879 (25 bp)
ATTTTGTGGACAACCTTGGATCATA
LOC_Os11g41590
OsAffx.19311.1.S1_at--1086--8091Chr11:24447948..24447972 (25 bp)
GGACTTGGACAATGACGACTTTATT
LOC_Os11g41590
OsAffx.19311.1.S1_at--593--8091Chr11:24447994..24448018 (25 bp)
GGAGCCGTCGATGAATATTGTTACA
LOC_Os11g41590
OsAffx.19311.1.S1_at--1060--10331Chr11:24448077..24448101 (25 bp)
TTTAACCGTGTTTGCCTACCATTTG
LOC_Os11g41590
OsAffx.19311.1.S1_at--1081--8511Chr11:24448100..24448124 (25 bp)
TGGACACCTCAAAGCTGCAGTATTT
LOC_Os11g41590
OsAffx.19311.1.S1_at--138--4771Chr11:24448113..24448137 (25 bp)
GCTGCAGTATTTGGGCCATACACGC
LOC_Os11g41590
OsAffx.19311.1.S1_at--505--331Chr11:24448130..24448154 (25 bp)
ATACACGCCCAGAGGATTACTGTCA
LOC_Os11g41590
OsAffx.19311.1.S1_at--665--7631Chr11:24448177..24448201 (25 bp)
GGGAGTTTTGTATACACACCTTATG
LOC_Os11g41590
OsAffx.19311.1.S1_at--390--571Chr11:24448244..24448268 (25 bp)
ATCCTCAACATTTGCACCAGATGCT
LOC_Os11g41590
Target Sequence 
AATACCATGATGACCTCAAGCCGTTCGCCAAACAATTATTGTCCTACTACGGTTACAGGAGAAAAGTATTTTGTGGACAA
CCTTGGATCATAGAAGAAGCCAATAATAGGAAGCATCAAAACACACAAAAAAAACCTGATCCAAAAGTAAATTTTGAGTG
GGACTTGGACAATGACGACTTTATTTCTATCGATGGGGCTGTCGAGGGAGCCGTCGATGAATATTGTTACACATTTTTCG
ACATGATTGGATTTCATCCCTACAAGGAGGTTATCTTCTTGGGTGATATTTTAACCGTGTTTGCCTACCATTTGGACACC
TCAAAGCTGCAGTATTTGGGCCATACACGCCCAGAGGATTACTGTCAAATGTACACGAATGGTATATATGGGAGTTTTGT
ATACACACCTTATGTGTCAGGACATTTTTATGCAGTGATTACTGGGGCAGGAGCTCATCCTCAACATTTGCACCAGATGC
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19311.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis