Browse Element(s) Details


Os.12350.1.S1_s_at

Description gb:AU162383
DB_XREF= gi:11025782
DB_XREF=AU162383
CLONE=R0595
TID=Os.12350.1
CNT=12
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.12350 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with strong similarity to protein pir:T48952 (A.thaliana) T48952 ribosomal S29-like protein - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4161011/1140S ribosomal protein S29, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41590OsAffx.19311.1.S1_at11/1111+24446932..24448320hypothetical protein
LOC_Os11g41600Os.11907.1.S1_at10/1111+24449427..24451354expressed protein
LOC_Os11g41610Os.12350.1.S1_s_at11/1111+24472318..2447405140S ribosomal protein S29, putative, expressed
LOC_Os11g41620NANA11+24474794..24477526transposon protein, putative, Mutator sub-class
LOC_Os11g41630OsAffx.19312.1.S1_at11/1111+24478427..24478948GRF zinc finger family protein
LOC_Os11g41630OsAffx.29766.1.S1_x_at2/1111+24478427..24478948GRF zinc finger family protein
LOC_Os11g41640OsAffx.31433.1.S1_at11/1111+24481564..24482895Helix-loop-helix DNA-binding domain containing protein
LOC_Os11g41650OsAffx.7376.1.S1_at11/1111+24487670..24491878Adenylyl-sulfate kinase, chloroplast precursor, putative, expressed
LOC_Os11g41659NANA11+24498220..24498413NA

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12350.1.S1_s_at--20--6011Chr11:24472371..24472395 (25 bp)
GAGAGCTCGAGGTCACCCTCACCGG
LOC_Os11g41610
Os.12350.1.S1_s_at--893--5871Chr11:24472400..24472424 (25 bp)
GAGCGATGGGCCACTCCAACGTGTG
LOC_Os11g41610
Os.12350.1.S1_s_at--738--351Chr11:24473686..24473706 (21 bp)
ATCAAGTACCGCTGAAGGCCATTTT
LOC_Os11g41610
Os.12350.1.S1_s_at--48--5291Chr11:24473695..24473719 (25 bp)
GAAGGCCATTTTGCCTCGCCGTTGA
LOC_Os11g41610
Os.12350.1.S1_s_at--324--10291Chr11:24473704..24473728 (25 bp)
TTTGCCTCGCCGTTGAGCCTGAGAA
LOC_Os11g41610
Os.12350.1.S1_s_at--469--6651Chr11:24473715..24473739 (25 bp)
GTTGAGCCTGAGAACTCCGCCTGAA
LOC_Os11g41610
Os.12350.1.S1_s_at--1144--8891Chr11:24473723..24473747 (25 bp)
TGAGAACTCCGCCTGAACCAGAGAA
LOC_Os11g41610
Os.12350.1.S1_s_at--519--2011Chr11:24473767..24473791 (25 bp)
ACTACATTTATGTGGTTTAGCTTTT
LOC_Os11g41610
Os.12350.1.S1_s_at--728--8011Chr11:24473796..24473820 (25 bp)
GGAGTACCGTCCTATTAAACATGTT
LOC_Os11g41610
Os.12350.1.S1_s_at--593--1011Chr11:24473842..24473866 (25 bp)
AGGTTGTTGAACTAACTTTGTGATC
LOC_Os11g41610
Os.12350.1.S1_s_at--263--6851Chr11:24473889..24473913 (25 bp)
GTTTGAGGTCTTGTGTATTTGATAC
LOC_Os11g41610
Target Sequence 
GAGAGCTCGAGGTCACCCTCACCGGCGGCGAGCGATGGGCCACTCCAACGTGTGGAACTCCCACCCCAAGAACTACGGGC
CCGGCTCCCGCGTCTGCCGGGTCTGCGGGAACCCTCATGGGCTGATCAGGAAGTATGGGCTCATGTGCTGCAGGCAGTGC
TTCCGCAGCAACGCCAAGGATATTGGCTTCATCAAGTACCGCTGAAGGCCATTTTGCCTCGCCGTTGAGCCTGAGAACTC
CGCCTGAACCAGAGAAATGGATCTTTTAGTATAATACTACATTTATGTGGTTTAGCTTTTGTTCGGAGTACCGTCCTATT
AAACATGTTTAAGTTTTGATGGGAACCATGAGGTTGTTGAACTAACTTTGTGATCAAATATTGAAGTACTCTCTTNATGT
TTGAGGTCTTGTGTATTTGATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12350.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis